Anoplopoma fimbria (sablefish): 129111066
Help
Entry
129111066 CDS
T09102
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129111066 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129111066 (copa)
Membrane trafficking [BR:
afb04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
129111066 (copa)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129111066 (copa)
Exosomal proteins of bladder cancer cells
129111066 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
129111066
NCBI-ProteinID:
XP_054479339
LinkDB
All DBs
Position
3:complement(5399022..5412194)
Genome browser
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPAEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETVPEVDPNAQLLQPSPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADQDMDAP
GGEGWGDDAELQLDEDGFMDAQEGSGEEGGIKEDGGGWEVEEDLDLPPELDIPTGAGGGA
EDGFFVPPTKGMSPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVSFEPYKALFMQT
LSRGRTCYLGLPSLPCLRSQPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTSGRF
EEAVERFRVILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKDTLDQQK
RLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAASFARRLLELGPKPDVAQQTR
KILAACEKTLTDAHQLNYDPHNPFDLCGASFVPLYRGRPVEKCPLSGACYCPTYKGQICR
VTQATEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttaactaaatttgagacaaagtcggcccgtgtgaaaggtctgagttttcatcccaag
aggccatgggttcttgcaagtttgcacaacggagtcatccagctgtgggactaccggatg
tgcaccctgattgacaagtttgacgagcatgatggtcccgtcagaggaattgatttccac
aaacagcagcctctgtttgtgtctggaggagatgattacaagatcaaggtatggaactac
aaactgagacgctgcctcttcactctccttggacatcttgactacatcagaactaccttc
ttccaccatgagtacccctggattctgagcgcatcagatgaccagactattcgcatctgg
aactggcagtcaaggacctgcgtctgtgtgctgaccggccacaatcactatgtgatgtgc
gcccagttccacccagccgaggacctggtggtgtcagccagtctggaccagactgtgcga
gtgtgggatatttctggtctgaggaagaagaacttgtctccgggcgctgtggagacagat
gtccgcggcatctctggtgtcgacttgttcggcgcctctgatgctgtcgttaagcacgtc
cttgagggtcacgatcgcggggtcaactgggcggccttccaccccaccatgcctctcatt
gtgtctggagccgacgacaggcaggtcaagatctggagaatgaacgaatccaaggcgtgg
gagctggatacgtgccgcggtcactacaacaacgtgtcctgtgccgtcttccacccgcgc
caggagctcatcctgtccaactctgaggacaagagcatccgggtgtgggacatgtccaag
aggaccggagtgcagaccttccgccgggaccacgatcgcttctgggtgctgggtgctcac
ccgaacctcaacctgttcgctgccggtcatgacagcggcatgattgtgttcaagctggag
cgtgagcgtccggcatacgccgtgcacggcaacatgctgtactacgtcaaggaccgtttc
ctccgccagctggacttcaacagcagcaaggacactgctgtcatgcagctccgcagtggg
tctaagttcccggtgttcagcatgtcttacaaccctgctgagaacgctgtcctgctctgc
actagggcgaccaacctggagaacagcacctatgacctgtactctatccccaaagaaagc
gactctcagaaccccgatgcccctgaggggaagaggtcatctggtctgactgcagtctgg
gtggccaggaacaggtttgctgtcttggaccgtatgcactctctgctcatcaagaacctg
aagaatgaaatcgtgaagaaagttcaggtgccgagctgcgaggaaatcttctacgctggg
accggctcgctgctgcttcgcgatgccgacggcgtcacgctgttcgacgtgcagcagaaa
cgctctctggccaccgttaagatcgccaaggtcaagtacgtggtgtggagcgctgacacc
agccacgtggctctgctggctaaacacgccatcatgatctgcaaccgcaagctggagagt
ctttgcaacattcacgagaacatcagagtgaagagtggagcctgggacgagagtggagtc
ttcatctacaccacctccaaccacatcaaatacgccctcacctctggtgatcatggcatc
atcaggaccctggacctgcccatctacgtgacccgtgtgagaggaaacagtgtttactgc
ctggacagggagtgcaggccgcgagtcctcaccatcgaccccacagagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgatgaggtgctccacatggtgcgtaatgccaagctg
gtgggccagtccatcattgcctacctgcagaagaagggctaccctgaggtggcgctgcac
tttgtcaaagatgagaagactcggtttagtctggctctggagtgtggaaacatcgaggtg
gctctggaggcagccaaggcccttgatgagcgcagctgctgggaacgtctgggtgaagcc
gcattgctgcagggtcaccaccaggtcgtggagatgtgctaccagaggaccaagaacttt
gacaagctcaccttcctctacctgatcaccggcaacctggccaagctgcgcaagatgatg
aagatcgctgagatcaggaaggacatgagcggtcactaccaggcagctctctacctggga
gatgtcagtgagagggtccgcatcctgaagaactgtggacagaagtctctggcttacctg
actgctgccactcatgggctggatgaagaggccgaagcgctgaaggagacctttgaccca
gaaaaagagacggtgccagaggttgatcccaatgcacagctgctgcagccttctccaccc
atcaaccctctggacacaaactggcctctgctcactgtatcaaagggcttctttgaggga
gccattgcggcaaaggggaaggcaggtcagatggctgccgaccaggacatggacgcccca
ggaggagagggctggggagacgatgccgagcttcagctggatgaagatggtttcatggat
gcccaggaaggatcaggggaagaaggtgggattaaagaggatggaggaggctgggaggtg
gaggaagacctggacctgcctccagagctggacattccgactggtgcagggggaggagca
gaagacggcttcttcgtcccaccgaccaagggaatgagtcccacacagatgtggtgcaac
aactcccagctgccagtggaccacatcctggctggctctttcgaaactgctatgagattg
ctccacgaccaggtaggagtggtgagcttcgagccctacaaggcgctgttcatgcagact
ctctccagaggccgcacctgttacctggggctgccttctctgccctgcttgcgtagccaa
ccccagaggaactggaaggactgtggcgcaaagcaaggactgcctgctgttggcctgcgc
ctctccgacctcatcgcccgcctgcagcagtgctaccagctgactacatccggacggttc
gaggaagctgtcgagcgcttcagagtcatcctgctgtctgttcctctgctggtggtggat
aacaagcaggagattgcagaggctcagcagctgatcacaatttgcagagagtacattgtg
ggtctgtccatggagacggagaggaagaagctgcctaaggacactttggatcagcagaag
aggctgtgcgagatggctgcttatttcacccactgtaatctccagccagtccacatggtg
ctggtgttgcgcacagctctgaacctcttcttcaagctgcgtaacttcaagacggccgcc
agctttgctcgacgcctgctcgagctggggccgaagccagatgttgcacagcagacccgc
aagattttagcagcgtgtgaaaagaccctgacggacgcccaccagctgaactacgacccc
cacaatccattcgacctgtgcggcgcttctttcgtccctctgtaccgtggacgtccggtt
gagaagtgccctctgtctggagcctgctactgccccacgtacaaaggccagatctgcagg
gtcacacaggcgacagagatcggtaaggatgtgatcggtctgcgtgtgagtccacttcag
ttccgttaa
DBGET
integrated database retrieval system
