Anoplopoma fimbria (sablefish): 129111126
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Entry
129111126 CDS
T09102
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
afb04040
]
129111126 (trpa1b)
Ion channels [BR:
afb04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
129111126 (trpa1b)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
ANK_LRRK2
Amdo_NSP_1-3
DUF465
Motif
Other DBs
NCBI-GeneID:
129111126
NCBI-ProteinID:
XP_054479393
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All DBs
Position
21:20947343..20964576
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AA seq
1118 aa
AA seq
DB search
MNFGREVARQTSCYTYVVEDEDSSLAKLNVFELAEKGDLALLQNLLRKSPEVLSEKDECG
ASPLHHAAAGDHVTLIQFIITAINSQYLNSCDEQGNTPLHWAVEKNMAGSCTALLDLGAD
PNILNTALLSPLHLAVSQGHNNLVELLLSYSSTDCNLQGDLGNTPVILACSINNFVALST
LIKHGARLCQQNKLGHFPVHAAAFAGAKKAIEVILKAGEKVGHQIEAHINYLDKSSSSPL
HLAVRGGNIEAIRLCIEVGAKVDQQQNDRSTPLHLACTQGAIDAVKLMLSSFDKVEDIIN
LTDGAFQTPLHRATIFDHTELAEYLISLGADVNSIDCKGNSPLLLATSCGAWKTVALLLS
KGANVNVKDRWGCNFLHLAILQPKGLKNLPEEVLQLGSVKVLLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQVGLECKSKDKKSVLHFAAQYGRINTCQRLLETITDSRLLNEGDER
GLTPLHLASKEGHTKVVQLLLRKGALLHSDYKGWTCLHQAASAGYTQTMDILLSASTKLL
DKIDEDGNTALHIAAREGHVAAVSLLLSRGAELILNKNETSFLHEAVQNGRKDVVNAIID
SDRSSEALKLFKSGSAQRSPILDMIEFLPETYKHLLDRCVRESDHDHNSPDYYIEYNFKW
LQAPLAARKIIVKDMKVQPLVALNAMVQYNRIELLNHPVCKKYLAMKWSAYGSIAHVLNM
FMYLLGLLPLTHLMVTLRPTLNNTVAGKHNIIMVQVSFFEQNLFLSICMAMVLVMNVCSI
VKELVQMSQQRWNYFKDYSNQSDWISAVLALLFMIPTILNAEGSLHWQAGAMAVLSSWIG
FLFYLQRFEGIGIYVVMFWEIMRTLVRIVMLFLFLVLAFGLAFHALMLNQKEFDSVPLSV
MQSFVMMVGELNYQNNILDTYLKHELPFGPLTYFIFVNFVLLMPILLVNLMIGLAVGDIA
EVQRNAALKRIGMQIDLHTALEDKLPYWFMKRVDKPSLIIYPNRHCSRNYIRQIFIGEEE
KNDVWNRLQVKPPGCTVLENELKKQKLRLKEVSSTMEKQHNLLKLIIQKMEITSEADEYD
GPVNIRGNMWHSLSQAKRRGHGTSQWVPLMKAIKSKIN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcggcagggaagtggcccgacagaccagttgttacacatacgtggtagaggat
gaggattcatccctggcaaaactaaatgtatttgagctagcagagaagggtgacctggct
ctcctgcagaacctgttgaggaagagcccagaggtcctgagcgagaaagatgaatgtggg
gcgagtccccttcatcacgccgccgcaggggaccacgtcaccctcatccaattcatcatc
actgccataaactcacagtacctgaacagctgtgatgagcagggcaacacgccgctacac
tgggcagtggagaaaaacatggcagggagctgcacggctcttctggaccttggtgccgac
cccaacatcctcaacacggccctcctctcccctctgcacctggctgtcagccagggacac
aacaacctggtggagctgctgctatcctacagttctacagattgcaatcttcagggggac
cttgggaacaccccagtgatacttgcctgctccatcaataactttgtggctctcagcaca
ttgataaagcatggagcgcggctctgccaacagaacaagctcggccatttcccggtgcac
gcagctgccttcgcaggtgcaaagaaagccatagaagtgatcctgaaggccggagagaag
gtcggccaccaaattgaagctcacatcaactatttagataagtccagtagcagtcccctc
catctggctgtacgtggcgggaatatcgaggccatccgcctctgtattgaggttggggcc
aaagttgaccagcaacagaatgacaggtccacaccgcttcatttggcctgcacccagggt
gctattgatgcagtcaaactgatgttgtcctcctttgacaaagtggaagatatcatcaac
ctaacggatggggctttccagacccctctgcacagggctacaatatttgaccacacagag
ctggcagagtacctaatttctttgggtgcagacgttaacagcattgattgtaaaggaaac
tctcccctgctgctggctacaagctgtggagcatggaaaactgtggctctgctactgtca
aaaggggcaaatgtaaacgtgaaagacagatggggttgtaacttccttcacctggccatt
ctccagcccaagggtctgaaaaacctcccagaagaagtactgcagcttggcagtgtgaag
gtgctgctgagctgtgaggataatgagggctgcaccccactccactacgcttgcagactg
ggtatccatgactcagtgaagaacatgctgggcctctcggggcaggtcggcctcgaatgc
aagtcgaaggacaagaagtctgtcctgcactttgctgctcagtatgggcgcatcaataca
tgccagcgactactggagaccatcacagactctcgtctgctaaatgaaggtgacgagcga
ggcctgacacctctccatttggcttcaaaagaggggcacaccaaggtggtacagctgctg
ctgcgcaaaggagctctccttcacagtgattacaagggctggacttgtctgcaccaggct
gcatctgcaggatacacacaaactatggacattctcctgtcagccagtaccaagttactg
gataaaatagatgaggatgggaacactgcactccacatcgcagcaagagagggacatgtg
gctgcagtcagtctcctgctgtctcgcggagcagagctcatcttaaacaagaatgaaact
tcgttcctccatgaggctgtgcaaaatgggagaaaagatgtggtcaatgctattattgac
agtgacagatcttctgaggctttaaaactgttcaaatctggttctgcccagcgaagtccc
attctagacatgattgagtttctgcctgagacctacaagcacctattggaccgctgtgtg
agggaatctgatcatgatcacaacagtcctgactattatattgaatacaacttcaaatgg
ctccaagctccccttgcagcaaggaagataattgtcaaggacatgaaagtccagccacta
gttgcactcaacgcaatggtgcagtacaaccgcatcgaactgctcaaccatcctgtctgc
aaaaagtacctggcaatgaagtggtctgcatatgggagcatagctcatgtgcttaatatg
ttcatgtacctgttaggcctgcttcccctaactcacctgatggtgactctgaggccaact
ctgaacaacactgtcgcgggcaagcacaatatcatcatggtgcaagtgtctttctttgag
caaaatctgttcttatcaatctgtatggcaatggtcttggtcatgaacgtctgctccata
gtgaaggaattggtgcagatgtcccaacagcgctggaattacttcaaggattattcaaac
cagagtgactggatttccgctgtcctcgctcttctgttcatgattcccaccatcctcaat
gcagagggttctttacactggcaagcaggggccatggcagttttaagctcctggattgga
ttcctcttttatctccagagatttgagggcattggcatctatgttgtgatgttttgggag
atcatgaggaccctggtccgtattgtgatgcttttcttgttcctggtgttagccttcggt
ttggcgttccatgctctgatgctaaaccagaaagagtttgacagcgtgccgctctctgtg
atgcaaagttttgtgatgatggtcggggagctgaactaccaaaataacatcctggacact
tatctgaagcatgaacttccttttggccccctgacttacttcatttttgtgaactttgtt
ctgctcatgccaatattgctggtgaacctgatgattggtctagctgttggagacattgct
gaagtacaaagaaatgcagccctgaaaagaattggcatgcagattgatctgcacaccgct
ctggaagacaagctgccttattggtttatgaaacgagtcgacaaaccctccctcatcatc
taccctaatcgccactgctccaggaactatattaggcagattttcatcggtgaggaggag
aagaatgatgtctggaatcgactgcaggtcaaaccaccgggctgcactgtgctggagaac
gagctcaaaaagcagaagctcaggcttaaagaggtgtcaagcacgatggagaagcagcac
aacctcctgaagctaatcatccagaagatggagatcacctcggaggcagacgagtacgat
ggcccggttaacatcagaggcaacatgtggcacagcttgagtcaggctaagcgaagagga
catggcacgtctcagtgggtcccactgatgaaggccatcaagtccaaaataaactga
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