Anoplopoma fimbria (sablefish): 129111564
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Entry
129111564 CDS
T09102
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
129111564 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
afb03036
]
129111564 (chd8)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
129111564 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
Chromo_MIT1
HTH_Hrp3
MUN
DDRGK
Motif
Other DBs
NCBI-GeneID:
129111564
NCBI-ProteinID:
XP_054479534
LinkDB
All DBs
Position
3:14954252..14972193
Genome browser
AA seq
2553 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDSLPDDSFSQGSSDPVEEALKLALGQVDPPTEPELTVSAGLGV
SVAAPAIPEPAPVQLPTQQPVPVATTQTVSIAAAPTVAPVPAPAPVDTLPQIQVQTTIPT
SSTVLLSSPLTVTSSSVTTTTATTQQFTQITHQLTAQQLAAITQQAGGKIVILKGPQGQA
QVLQTVSGATGQTTGKVIRVLSGTPLKPGMSILQGGTVLNQASPGQAQVKVGTAGVQRLL
QSPNGPVKQMLLTMPQQTQGQTVQVQIPSQAQMAQGQTQVQVQTQGQVQLQPAMQGQTQG
GEAKRITLVLQQPSQAGSAAQPGQGQQQVTQVQQVQTTQGGQQQIPTRLVLGQLPGGKLV
LQGSQLAALTQARAGGQAGQPKVLTIQLQLQQQPNQQGGIKYQLVSGTGNTGGPQVLQIT
QGQGGQRVAVPLKMLLQPQTSSASSAGGTVSVVKVINTSAAGPSTTTTTASQAIRITKAP
GEPTAVRRVEILCKQEKANRIVAEAIARAKARGEKNLPRVLNQDELPATQTSPELGGTVT
VVSTAKKKSSGGGSKKKSPAAGGTTPKTTGGADKKSKVKTPGGTTGVAGGTVVPGAGNKS
KSKTKTNTITLVGAKKRKRNASSDHSDGELSPASPAALDDDLITKRRSNRVVKRKKYTED
LDIKITDDEDEQEDVDVTTTAAAVASISGGSAAQLKKEMELDVDGQPSMQFFVENPSEED
AAIVDKILSLRLTKKEVSIGQYTTVEEFFVKYKNYSYLHCEWASLNQLEKDKRIHQKIKR
FKTKQAQMRNLFQEDEEAFNPDYVEVDRILDVSHSVDKDNGEPVIYYLVKWCSLPYEDAT
WELKEDVDEGKAEEFSKIQNRPPRLKRTVRPPASAWKKLEETREYKNGNILREYQLEGVN
WLLFNWYNRQNCILADEMGLGKTIQSIALLSEEYDAGVQGPFLVIAPLSTITNWEREFST
WTDMNAIVYHGSLASRQMIQQYEMYFKDDKEHLIPGAYKFDALITTFEMVLSDCPELREI
SWRCVIIDEAHRLKNRNCKLLDSLKMLDVEHKVLLTGTPLQNTVEELFSLLHFLEPAQFP
SETEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKY
YRAILERNFTFLSLGVNSNSNVPNLLNTMMELRKCCNHPYLINGAEEKIVSELREKYDPM
ALDFHLQALIRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERI
DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQA
QARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKEGNVNGQVQQ
FSKKEIEDLLRKGAYAAIMDENDEGNRFCEEDIDQILQRRATTITIESEGKGSTFSKASF
VASENRNDIALDDPEFWQKWAKRADIDMDSMNRKNTLVIDTPRVRKQTRQYSTLRGEGGD
LSDMDSDDEYPPANSRQSRSSRRTDRHSGGGYGRTDCFRVEKHLLVYGWGRWRDILSHAR
CKRRLSERDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGREPQTLLNHSGLSIP
VPRGRKGKRVKAQSTFDVQKVEWIRKYNPDTLLLDESYRKHLKHQCNKVLLRVRMLYYLK
QEVIGEHADAVLKGANSRDVNIWMPEMEQQEVPARWWDTEADRSLLAGVFKHGYEMYTTM
RADPCLCFLERAGRPDDKAIDAEQHTGDAEMGDDPDYDKYSEDPEFKPASRHAKDLFDEP
DSMNVDDEISVEDKVGPVITESFSIQSGACDWPSSSSLTARLRRLITAYQRTYRQEQLKI
EAEAKGDRRRRRCEQASKLKEIARQERQQRWTRREECDFYRVVSTFGVEKISKEQSLPEG
GDLDFDWNRFRTFARLDKKTDESLSRYFRSFVAMCRRVCHLRPGRGDDSPEISQTVAPIT
EERASRTLYRISLLRRLREKVLPHPSLEDRLPMAPTSSELPGWWNIPEHDRQLMLGAALH
GVSRTELSIFSDPQFTFNQARDEFIMNQQAPPPPPEAPPIMLLSHPKTEEELPVVKEELA
ELDARLLGGEISAQLQSTPLSHHDGKARGQAWSLKRSRGRGEKTGGRKGEGGSDSDSDSD
SGSSSSGRSGSSDESGESEEEAERAGMKLCDVDEENSLLSMTLSQEGIPPPDPLRVDWPK
DRVLINRLDNMCTLILSGQWPSGRRYLPEAQLNPSSELVGGEMAYTRVIRKPSGMPGGPG
EEGEDGEFTVKLLKEEGLKLTFSKQSLMPNGSGGESSGRKRRKDQELSDPDGLNDPLERT
PRRRDPPTWLKENPDYEVEGDMLELLVNRSKRKRRRRADKALTGSEKVKVINMRTGKKVG
AAFCPMLQDLREYLEENPDNAVAPDWSETVRKSGFLPATFFHRLLTEHSEIPKKSRRRHH
HHHHHHHAPEPTPEDPNLDGVEEETLVSDGAYMMDEEDLETSHHFLTSQDFEVKMEGGDS
LSQGDYDSSDQEALLDDVIIAQKDSDSSSSSED
NT seq
7662 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggacctctttgaggatacacccctgtttaacctggattcccta
ccggacgactccttctctcagggctcctcggaccccgtggaagaggcccttaagctggcg
ttgggtcaagtggacccaccaacagagcctgagctcacggtcagcgcaggccttggggtt
tctgtagcagctcctgccatcccagagcctgcccccgttcaacttcccacacagcagcca
gtgccggtggcgactactcagactgtttccatagctgcggctcccactgtagccccagtc
cctgctcctgcaccagttgatactttacctcagatccaagtccagaccaccatacccacc
agtagcactgtgctgctgagctctcctctgacagttactagctcctcagtcaccaccacc
accgccaccacgcagcagttcacacagataactcatcagctcactgcacagcagttagct
gccatcacacagcaggccggtggcaaaattgtcatactcaaaggtccccagggtcaagcc
caggtgctgcagactgtatcaggagccacaggccagacaactggaaaggtcatccgtgtg
ttgtccggcactcctcttaagcccggcatgtccatactgcagggggggacggtattgaat
caggccagcccgggacaagctcaagtcaaggtgggtactgctggggtgcagaggctgcta
cagtctcccaacgggccggtgaaacagatgctgctgaccatgccccagcagacacaaggc
cagaccgttcaggtgcagattccttcccaagcacagatggctcaaggccagactcaagtc
caagtccagacccaaggccaggtgcagctacagccagccatgcaaggccaaacacagggt
ggcgaagcaaagcggatcaccctggtcctccagcagccttcccaggctggctctgctgct
caaccgggtcaaggccagcaacaggtgacacaagtccagcaggttcagacaacccagggg
ggccagcagcagatcccaactagactggtgctggggcagctccctggaggcaaactggtg
ctccagggaagccagctagcagccctgacccaggctcgggctggaggccaggctgggcag
cccaaagtcctaacaattcagctgcagctgcagcagcagccaaaccaacaaggagggatt
aagtaccagttggtctcaggaactggcaatactggcggcccacaggtgttgcagatcacg
cagggccaaggaggacagagagttgcggtgccgctcaaaatgcttctgcagccacagaca
agctcagcatcctcggccggcggcacggtgtctgtggtgaaggtcatcaacacgtcggct
gcaggcccctccactacaaccacaactgcttcccaggccatccgcatcaccaaggccccc
ggcgagcctaccgctgtgcgacgagtggagatcctctgcaaacaggagaaagcaaaccgt
attgtggctgaagctatcgcccgggccaaagcgcgtggcgagaagaacctgcccagagtc
ctgaaccaggatgagcttccagccacacagacctccccagaattggggggtactgtgact
gtggtgtccactgctaagaaaaagtctagcggaggaggaagcaagaagaaaagtcctgca
gctggaggaacgactcccaaaaccacaggtggggccgacaaaaagagcaaagtaaagacg
ccaggaggaacaactggagtggctggaggcacggttgtacccggggctgggaacaagagc
aaaagcaaaactaaaacaaacactattactctagtgggagcaaagaaaagaaagcgtaat
gcgtcctcagaccactctgatggggagttgagccctgcctcacctgctgctctggatgat
gacctgattacgaagaggcgctccaatcgcgtggtgaagcggaagaagtacacagaggac
ctggatatcaagataacggatgatgaggatgagcaggaagatgtagacgttactacaacc
gcggcggctgtggcctccatcagtggcgggtcggcagcgcagcttaaaaaggaaatggag
ctggatgttgacggacagcccagcatgcagttctttgtggaaaaccccagtgaagaagat
gcagccattgtagacaaaattctgtctttaaggttgaccaagaaggaggtgtccataggc
cagtacaccactgttgaggaattctttgtgaaatacaagaactattcatacttgcactgc
gagtgggccagtttgaatcagctggagaaagataaaaggatccatcaaaagatcaagagg
ttcaagaccaagcaagcacagatgaggaatctcttccaggaggatgaggaggcttttaac
ccagactatgtagaggtggacaggatcctggacgtttcccacagtgtggacaaggacaac
ggcgagcctgttatctactacttggtgaagtggtgctctctgccttatgaggatgccacc
tgggaactgaaggaggacgtggacgagggcaaggcagaagaattcagcaaaatccaaaac
cgaccaccgcgcctgaagagaacggtacggccgcctgccagtgcatggaagaagttggag
gagaccagagagtacaagaatggcaacatactcagagagtaccagcttgaaggagtcaac
tggctgctcttcaactggtacaacaggcagaactgtatcctggcagatgagatgggtctg
gggaagaccatccagtctatcgcgctgctgtctgaggagtacgatgctggcgtccagggt
cctttcctggtcattgctcccctctccaccatcaccaactgggagagggagttcagcaca
tggaccgacatgaacgccatcgtctaccacggcagcttggccagccgacagatgatccag
cagtatgagatgtacttcaaggacgacaaggagcacttgatcccaggtgcgtacaagttt
gacgccctcatcacaacgtttgagatggtgttatctgactgcccagagctgagggagatc
tcctggcgctgtgtgatcattgatgaggcccaccgtctcaagaatcgcaactgcaagctg
ttggacagcttgaagatgctggatgtggaacataaggtgttgttgaccggcactcctctc
cagaacacggtggaggaactcttcagcctgcttcatttcctggagcctgctcagttccct
tctgagactgaattcctcaaagactttggagacctcaaaacagaggaacaggttcagaag
ctgcaggccatcttgaagcccatgatgctaagaaggctcaaagaagatgttgaaaagaac
ttggcacccaaacaagagaccatcattgaggttgagttgacggatgttcagaagaagtac
taccgggccatcctggagaggaacttcactttcctcagtttaggggtaaacagtaacagc
aatgtccccaacctgctcaacactatgatggagctacgcaagtgctgcaaccacccctac
ctcattaatggcgcggaggagaagatcgtatctgagctacgggagaagtatgaccccatg
gcgctcgacttccatttgcaggccctgattcggtcggccggcaaactggtgctactggac
aagctgctgcctcgcctcaaggctggtggccacaaagtgctcatcttctcccagatggtg
cgctgcttagacattctggaggactacctcattaacaagagatacctttatgagcgaatt
gatggcagagtgcgtgggaacttacgacaagctgccatcgatcgcttcagcaagcctgat
tcagaccgctttgtcttcctgctgtgtacccgtgctggcggcctgggtattaaccttact
gctgctgacacctgtgttatatttgactctgactggaaccctcaaaatgacctgcaggcc
caggctcgatgtcatcgtattggtcaatctaaggcagtcaaggtctaccgcctgatcact
aggaactcttatgagagggagatgctggataaagcaagcctgaagcttggcctggatcgt
gccgtcctgcagagcatgagtggaaacaaagaaggcaatgtcaacgggcaagtacagcag
ttctccaagaaggagattgaggacctgctgaggaagggagcctacgctgccatcatggac
gagaatgatgaaggcaatcgcttctgcgaggaggacattgaccagatccttcagcgaaga
gccaccaccatcaccatcgagagcgagggcaagggctccacgttctccaaggccagcttc
gtggcctctgagaaccgcaatgacattgccctcgatgaccctgaattctggcagaagtgg
gccaagagagccgacatagacatggactccatgaaccgaaagaacacccttgtgattgac
actcccagagtccgcaagcagacccgccagtactccactttacgaggtgaaggaggagac
ctgtctgatatggacagcgacgatgagtatccaccggccaattccagacagtcgcgttcc
tcgcgccgcaccgaccgccacagtggagggggttacggccgcactgactgtttccgggtg
gagaaacatctgcttgtctatggttggggtcgctggagggacatcttatcccatgccaga
tgtaaacgtcgtctgagtgaacgtgacgtggagacaatctgccgagtcatcctggtcttt
tgtctgctccactatcgtggagatgagaacatcaagagtttcatctgggagctcatcaca
ccgccagagaacggccgcgaaccccaaacattactcaaccactctggcctgtctatccct
gtcccaagaggcagaaagggtaaaagagttaaggcccagagcacgtttgacgtccagaag
gtggagtggatccgcaagtacaaccctgacaccctgcttctggacgaaagctaccgcaaa
catctcaagcaccagtgcaacaaggtgttgctgagggtacgcatgctctactacctgaaa
caggaggtgatcggcgaacatgcagacgctgtcctgaaaggggccaacagcagggacgtt
aatatctggatgcctgagatggagcagcaggaggtccccgcaagatggtgggatactgaa
gcagaccgctcactgcttgctggtgtatttaagcatggttatgagatgtacacaactatg
cgtgccgatccctgcctctgcttcctggaaagagctggtcggcctgatgacaaggccatt
gatgccgagcagcacactggtgatgctgagatgggagatgatcctgattatgataagtac
tctgaagacccggagttcaagcctgcgtcaagacacgccaaagatcttttcgatgagcct
gattccatgaacgtcgacgatgagatttctgtggaagacaaggtggggccagtgatcaca
gaaagcttttccatccagagcggtgcttgtgactggccctccagctcatcgcttacagcg
cggttgcggcgactgatcacagcttaccaacgcacctacaggcaggagcagctaaagatc
gaagcagaggcaaagggcgaccgcaggcgcaggcgatgcgaacaggccagcaagctgaag
gagattgcacggcaggagcgccagcagaggtggacacgtagggaggaatgcgacttctac
cgcgtggtatcgacttttggtgtggaaaagattagtaaggagcaaagtcttcctgaggga
ggagatcttgattttgactggaaccgcttccggacctttgctcgtctggataaaaaaacg
gacgagagtctcagtcgatacttccgctcgtttgttgccatgtgtcggagagtttgccac
cttcgcccaggccgtggtgacgattccccagagatttcccagactgtcgcccccatcact
gaggagcgtgcttcccgaaccctttaccgtatcagcctcctgcgtcgcctccgtgagaaa
gtcctgccccacccatccctggaggaccgtctgcctatggctccgaccagctccgagctg
cccggctggtggaatattccagaacatgatcgtcagctgatgctgggcgccgcactgcac
ggcgtcagccgcactgagctctccatcttctcagacccacagttcaccttcaatcaggct
cgggacgagttcatcatgaaccagcaggccccgccacctccacctgaggcaccacccata
atgctcctcagccatccaaagactgaggaggagctgcctgttgtgaaggaggagttagct
gaattggacgcccggttgcttggaggtgaaatcagtgctcaactgcagagcacgcccttg
agtcaccatgacggcaaggcacgagggcaggcctggagcctcaagaggagcagagggagg
ggcgaaaaaacaggaggaaggaagggcgagggagggtcagattcagactctgattcagat
tcaggctcatcgtcatctgggagatcgggcagcagtgatgagagtggagagagtgaggaa
gaggcggaaagagctggcatgaagctgtgtgacgtggatgaagaaaatagtttactctct
atgactctgtctcaggaaggtattcctcctcctgatcctctcagagtggattggcccaag
gaccgtgtgttaatcaaccgtctggacaatatgtgtacgctgatactgagtggtcagtgg
ccctcagggcggcgctacttgcccgaggcgcagctcaacccgagctcagagctggtggga
ggcgagatggcctacacaagggtgatccgtaaacccagcgggatgcctggtggccccgga
gaagaaggagaagatggagagttcactgtcaagctccttaaggaggagggactcaagctg
accttctccaagcagtccctgatgcccaatgggtcagggggagagagcagcggccgcaag
aggcgcaaggaccaagagttatcagacccagatggactcaatgatccactggagcgtact
cctcggcgcagggacccccccacctggttaaaggagaacccagattatgaggtggaggga
gacatgctggagcttcttgtgaacaggagcaagaggaagaggaggaggagggcagataaa
gccctgacaggcagtgagaaggtcaaagtcattaacatgaggacaggaaagaaggtcgga
gctgcattttgtccgatgctgcaagacctgagggaatatctggaggagaatcctgataat
gctgtagcacccgactggtccgaaactgttcggaaatctggcttcctgcccgcgaccttc
tttcaccgactgctgaccgagcactcggagatccctaagaaaagccgccgccgccaccac
caccaccaccaccatcaccacgctccggagcccacccccgaagaccccaacttggacggg
gtggaagaggagactttggtgtcagatggagcgtacatgatggatgaggaggacctcgag
acctcacatcacttcctcaccagtcaggactttgaagtgaaaatggagggcggcgacagc
ctttcccaaggtgactatgacagctcggatcaagaggcgctattggacgatgtcatcata
gcacagaaggactctgactcctcatcaagctcagaggattga
DBGET
integrated database retrieval system
