Anoplopoma fimbria (sablefish): 129111588
Help
Entry
129111588 CDS
T09102
Symbol
sox1b
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129111588 (sox1b)
Transcription factors [BR:
afb03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
129111588 (sox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
SelP_N
Motif
Other DBs
NCBI-GeneID:
129111588
NCBI-ProteinID:
XP_054479565
LinkDB
All DBs
Position
22:6238742..6239822
Genome browser
AA seq
359 aa
AA seq
DB search
MYSIMMETDLHSPVVPQTNPSNPGXGGGGVSGGPGGKVPQDRIKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKT
LLKKDKYSLAGGLLGSPVGVGGGQRLVESPGGGHAGANAGYTTHMNGWANGAYSGQVAAA
AAAAHAMMQEAQLAYTQHPGTGAHHHHHHPHPHHHSHSHHHPQHRYDMTALSYSPLSNSQ
SYMSASPPGYGGITGYTHQHQSSGVSPVSSGTIGGTLGSLVKSEPSVSPPVSTARGPPTC
PTGDLRDMISMYLPTGGEAVGVVGVVDSSVHSRLHVLHPQHYQSSGSSPVTGTVPLTHI
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcattatgatggagacggacctgcattcccccgtggtgccccagaccaacccg
tctaacccggggngaggaggaggaggagtaagcggaggacctggaggcaaagtcccccag
gacaggatcaagagacccatgaacgcattcatggtgtggtccaggggccagaggaggaaa
atggctcaggagaaccccaagatgcacaactctgagatcagcaagaggctgggagcggag
tggaaggtgatgacggaggcggagaagaggccgttcattgatgaagccaagcggctccgg
gccatgcacatgaaggagcacccggactacaagtaccggccccggaggaagaccaagacc
ctgctgaagaaggacaagtactcattggccggcgggctgctcggctcacctgtcggggtg
ggtggaggtcagaggctggtggagagccccggaggcggccacgcaggagccaacgcggga
tacaccacccacatgaacggatgggcgaacggtgcgtactcgggccaggtggcggcggcg
gcggcggcggctcacgcgatgatgcaggaggctcagctggcgtacacgcaacacccgggc
accggagcacaccaccaccaccaccacccacacccacaccaccacagccacagccaccac
cacccgcagcacaggtacgacatgaccgcgttgtcttacagcccgttatcaaactctcag
agctacatgagcgcgtctccgccggggtacggaggcatcaccggatacacgcaccagcac
cagagctccggtgtgtccccggtgtcctccgggacgatcggagggactttggggtccctg
gtgaagtcggagcctagcgtgagtcctccggtgtccacggcgaggggaccgccgacgtgt
cctacgggagacctacgggacatgatcagcatgtacctgcccaccggaggagaggcggtg
ggggtggtgggggtggtggactcctcggttcacagcagactgcacgtgctccacccgcag
cactaccagagcagcggctcctctccggtaaccgggacggttcctctgactcatatttaa
DBGET
integrated database retrieval system
