Anoplopoma fimbria (sablefish): 129111668
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Entry
129111668 CDS
T09102
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129111668 (rc3h1b)
04121 Ubiquitin system [BR:
afb04121
]
129111668 (rc3h1b)
Transcription factors [BR:
afb03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129111668 (rc3h1b)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129111668 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
Prok-RING_4
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
129111668
NCBI-ProteinID:
XP_054479684
LinkDB
All DBs
Position
3:17709109..17727696
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AA seq
1129 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKVQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPNQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMPDEGLPLDVAVTRKPS
PLTNGSGGPSLPQLIARGTDTVPYELLRKPMTRDGGSPSAPGSPPDGLDPVLSKTGMPLP
PHAMDHRRMPVDHLSGVKHMPVVARGSPVYPQAPLPEICYDARPPPSASQYEPPQYPTGY
PYQQPPQYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERTYQAPHSGPPFSYPHPPHHDR
GRHGTYNGPPPPPQPYPSQRDGLVRMSPDMPPPSAGPANSLYHEPSSRDRYPPDGYYTPG
AQPPPMRTYVRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLAHPFPSD
YPPEYGDESSKMKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVPGAMDMMNAEAKG
MREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMASAPQNP
SSKHMAMAAEYTYGSHGGWGGASYPSHQTASSSQGHFSERLPMAAPDREQLKIELQQVNQ
QINQQTQMRSMEAASNSLLLQREAIALAGQSGQPSQGQAAGAQQQPKWPAVGASTTAVSS
EQLSLELHQVEREIGKRTREMALENQVNHDVQQYKMKPAENGQPEHKTQLEEISLALGEV
SNGSNSLQESAVGGSMLSLTNKTSALGLCSDPGATGSEMQKNGVVHSCS
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagcaccacaatggacggagttcctgctgtgccccatctgcacacagaca
tttgaggagactgttcgccggcccatcagcttgggctgcggacacactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagtacagac
atcgagcagctacctgtcaacactgccctgttgcagctggtgggaggccaggttcctaag
gttcagccagttgccttgattaccagtccagaggactcgcagcattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacctctcagcaacacccgaggtgttggc
ctgagcagtacggcccagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggttgaggaggagggccgtgttagagccatgagagctgcccgctct
ctaggtgagcgaactgtcaccgagctcatcttgcagcaccagaatccaaaccaactctcc
tccaatctgtgggccgctgtgcgtgcacgaggatgtcaatttctaggcccagccatgcag
gaggaagctctaaagttggtcctccttgctctagaggacggctctgcactgtccaggaag
gtgttggttctctttgtagttcagaggcttgagccacgcttcccgcaggcctctaagaca
agcattggccatgtggttcagctcctctacagggcctcctgcttcaaggtgaccaaacgc
gatgaagattcatccctgatgcagctgaaagaggaattccgtacttatgaggctctgcgg
cgcgagcatgactctcagatagttcagatagccatggagggtggactgcgcatcgcacct
gaccagtggtcttctctgttatatggagatcaatctcacaagtcacacatgcagtctatc
atagataagctgcagaccccggcgtcttttgctcagagtgtccaggagctgacaattgca
ttgcagagaaccggagacccagccaacctaaacaggctgcggccacacctggaactactg
gccaacattgatcccagtcctgatgctcctcctccgacatgggagcagcttgagaaaggg
ttggtagcagtgaaaacagtggtgcatggtctggtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaagtacaagacatacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgtggagccagctgcacctttgctcattctcag
gaagaactggagaagtatcggaaaatgaataagcgtttggcagctcgcctccctggttca
ggagggctcatgccagatgagggtcttcctcttgacgtcgcagtgacccggaagccttca
cctctcaccaacggtagtggtggaccttccttgccccagctaattgcccgtggcactgac
acagtcccatatgaactgttgcgtaaacccatgacgagggatggagggagtcccagtgcc
ccaggatcaccacctgatggcctggaccctgtgctttccaaaactggtatgcctctgcca
cctcatgccatggaccaccgaaggatgccagtggaccacctctctggggtgaagcacatg
cccgtggtagccagaggttcaccagtctacccccaggcaccgctccctgagatttgctac
gacgctcgcccgccaccttctgcttctcagtatgagccccctcaataccccacagggtac
ccttaccaacagccaccacagtatgtccctcgggactacatgcgtaaccctcctccccca
agtgagtcaggacccccttaccaggatccctatcccggctatggccctccagagcgcacc
taccaggcccctcactctggtccacctttctcttaccctcaccctccgcaccatgaccga
ggtcgccacgggacctacaatggcccgccacctcccccacagccttacccatcacagagg
gacggcctggtcagaatgagtcccgatatgcccccgccatcagcaggaccggctaactcc
ctttaccacgagcccagttcccgtgatagataccctccagatggctactatacaccgggt
gcccagcctccacccatgaggacttatgtcagggggccatcatatagtggttcacagccc
agccttgactacctgcaccgacgccggcaggagctgttatcacagctggaggaaaggaag
gtcatatcccctccaccattcgcagcctcccccactcttgcccatcccttccccagcgac
taccctccagagtatggtgatgagagctccaaaatgaaatgcagagagcctgactatgct
gggcagtactctccctggtcttgtgaaacgattggctcctacattggtacaaaggatgcc
aaacccaaagacgttatggttcctggtgccatggacatgatgaatgcggaggctaagggt
atgagggaaccatcactggaggctcctcggaggggtgccgaagtaaaagacgatgaccct
atcatcccttttggcccccagcccactgtatcccgcttcggtgccatctcccgcacctca
aagacgggctaccagaccacaggccctgtgcaggctatggcctctgctccccagaaccca
agctctaaacatatggccatggcagcagaatacacatatggaagccatggaggatggggt
ggagcttcatacccctcacaccagactgcctcctcctctcagggacacttcagtgagcgt
ttgcctatggcggctccagacagagaacagttaaagattgagctgcagcaggtcaaccag
cagatcaaccaacagacccagatgcgaagcatggaggctgccagtaactctttactgctg
cagagggaggccattgcattggccggccagtctgggcagcccagtcagggccaggcagca
ggagctcagcagcagcccaagtggccagcagtgggagcaagtacaacagctgtctccagt
gaacagctaagcctggagctccaccaggtggagagagagattggcaagaggacccgtgag
atggctttggaaaaccaagtaaaccacgatgttcagcagtataagatgaaacctgcagag
aatggacaaccagagcataagactcagctagaagaaatctccctggctcttggtgaggtg
tcaaacggctccaacagtctgcaagaaagtgcagtgggcgggtccatgctgtcactgacc
aataagacgtctgctttgggcttgtgctctgatccaggtgccactggctcagaaatgcag
aagaatggcgtcgtccattcctgctcatag
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