Anoplopoma fimbria (sablefish): 129111797
Help
Entry
129111797 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
afb
Anoplopoma fimbria (sablefish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
129111797
NCBI-ProteinID:
XP_054479880
LinkDB
All DBs
Position
22:5012412..5037123
Genome browser
AA seq
746 aa
AA seq
DB search
MAAVPLHSLCLPLTVLQLCLSHLAHGGAYYGHKQPPQQHQPLPQYNDGYPQQQFLGNEMP
HLPYGKEGPSLPQYGKELPQLPLQMSKERPLIDSKGQTFPRGAKGPPPPIPGGEGLREGP
QGFQGPPGPTGPPGPQGPPGLPGQGMPGLPGKSGPPGPQGYPGIGKPGMPGLPGKPGGPG
LPGPKGDLGPYGGEGPTGLPGPPGLPGPPGLPGFSKPGGQGLPGQLGPLGEPGQKGPPGF
PGPQGPKGEKGYGQPGLPGLKGPNGAPGPSGNVGIPGVGKPGLNGLPGQPGIAGKPGPPG
ESGLMGPPGERGQTGLPGLPGIGKPGKEGLRGQQGFSGGKGESGPPGLPGGPGLPGYGKP
GFPGPKGHKGHAGLHGPPGLKGDKGHAGLPGVIGSTGPSGMPGPPGPIGPPGSLGFPGQK
GEYGVGGPKGNPGIKGDLGPXGLPGQPGLSAGGGQPGLRGLQGPVGPKGEPGMRGSLGAP
GAAGLTGLRGEGGQPGEKGYQGPQGIPGLSGPGGPLGPPGRPGPKGETGVPGKPGYPGEG
KLGPPGHIGPQGNPGSSGPAGLPGQPGQPGPPGPPGLPAASPDLGQILPVTGPYAGQRQG
YKKQTNGGDVGGNSVEMPAFTAKLTNPFPPVGSPVVFDKLLHNGNQDYNPQNGVFTCSVP
GVYYFAYHVHCKGGNLWVALMKNNEPVMYTYDEYKKGLLDQASGSAVLPLRQGDSVHIQL
PSDQAAGLYAGQYVHSTFSGYLLYPM
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgtacccctccactctctctgtctacccctcacagtgctccagctgtgttta
tcacatctggcccacggcggggcgtattacggacataaacagcctcctcaacagcaccag
cccttgccacagtacaacgatgggtatcctcagcagcagtttttggggaacgagatgcca
cacctgccttatggcaaagaagggccgtcgctgcctcagtatggaaaagagcttcctcag
ctgcctttgcaaatgagcaaagagaggccactgattgacagcaaaggacaaacattccca
agaggggcgaaaggtccacctccccctattccaggtggagaaggtctcagagagggaccg
caaggatttcagggtcctccgggaccaacgggaccgccgggaccacaaggcccccctggg
ctaccaggccagggaatgccagggctgccgggaaagtcggggcctcccggtcctcaaggc
tacccgggaatcggaaaacccggcatgccaggattgccgggaaaacccggaggacccggg
ttaccgggaccaaaaggcgaccttggtccttatggtggcgaaggaccgactggacttcct
gggcctccggggctcccaggtccccccggactcccggggttttcaaaaccaggaggtcaa
gggcttcccggccagctgggtcctctgggggagcctggccagaaaggtccgcctgggttt
cctggccctcaaggcccgaagggagagaaaggatacggtcaaccgggtttgccaggtctg
aaaggacctaacggagcaccgggtccatctggaaatgtaggcatccctggggttggcaaa
cctggcttgaatggtctacctggacaaccagggatagcaggaaaacctggtcctcctgga
gagtcggggctgatggggcctcccggcgaaagaggtcaaacgggactaccgggcttgccg
ggaattggaaaaccgggaaaagagggtttaaggggacaacagggattctctggagggaaa
ggagaatcgggccctcctggtttaccagggggtccgggcttgccaggttatggtaaacca
gggtttccgggacctaagggtcacaagggacacgccggtctccacggacctccgggcctg
aaaggcgataaaggtcacgcgggtcttccgggggtcatcggttccaccggtcctagcggt
atgcctggcccaccgggaccaatagggcctcccggtagccttggcttcccggggcaaaag
ggagaatatggtgtggggggaccaaaaggaaatccaggaataaagggtgatttagggccc
ncgggtcttccggggcagccgggtttgtccgccgggggcgggcaaccgggactgagaggt
ttgcaagggcccgttggccctaaaggagaacccggtatgaggggttcactcggtgccccc
ggtgctgcaggattaactggattgagaggagaaggggggcaacctggagagaaaggctac
cagggaccacaaggtatccctgggctttcaggaccaggaggaccactcggacctcccggg
cgtccagggccgaaaggcgaaacgggcgtacctggtaaacccggctatcccggcgaggga
aagctaggaccccccggccacattggtcctcaaggtaaccctgggtcgagtggccctgcc
ggacttccagggcaaccgggacaacccggaccccccggtcctccgggactacccgccgcg
tctcctgacctcggacagatcctcccggtgaccggcccgtacgccggccaaagacaaggt
tacaagaagcaaacgaacggaggtgacgttggcggaaatagcgtcgagatgcccgcgttc
acggcgaagctcacgaacccattccctcccgttggctcccctgtcgtctttgacaaactc
ctgcacaatggcaatcaggactacaatccccaaaatggtgttttcacctgcagcgtacca
ggggtctactactttgcctaccacgtacactgcaaagggggtaacctgtgggtggcgctg
atgaagaataacgagccggtgatgtacacgtacgacgaatacaaaaagggcttgctggat
caggcatcggggagtgccgtgctcccgctacgacagggagactccgtgcacatacagctg
ccgtcggaccaggctgcgggactttatgccggtcaatatgtccactccacgttttccgga
tacctactgtacccgatgtaa
DBGET
integrated database retrieval system
