Anoplopoma fimbria (sablefish): 129111864
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Entry
129111864 CDS
T09102
Symbol
trim25l
Name
(RefSeq) LOW QUALITY PROTEIN: tripartite motif-containing protein 16
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
129111864 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129111864 (trim25l)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129111864 (trim25l)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129111864 (trim25l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRIM_CC
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-B_box
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_2
ANCHR-like_BBOX
zf-RING_5
DUF948
Motif
Other DBs
NCBI-GeneID:
129111864
NCBI-ProteinID:
XP_054479976
LinkDB
All DBs
Position
22
Genome browser
AA seq
814 aa
AA seq
DB search
MSSKLWTEEQFNCPVCLDLPNDPVTIPCGHSYCMGCIKDYWSKDDPKGVYSCPQCRQTFS
PKPSLSRNTMLAEAVEQLRKGALKADVRESMRIAQKGSKGKPSSSSSSSSAVPCDLCKGE
QRAAVKSCLSCMSSYCTAHLKPHTTKKALRAHELIAPTANLAEKICTQHKYLQEFYCRQC
KMFVCWLCTSNQHKGHECVSTKVERFEKQKVLSELQTENQQRLKDRELELKDMKKMMEGM
KRSADRVHGDTEQVMVELQRSVERLQELLEEVLDQAGMEKMGQAQEVIDSLEAEVKEMRR
REKEMRDLASCEDHIHYLEACESMCTPLETSDLPAVTVNPEASFEPAREAILDLRDRVED
LCNQELGKITKQVNDTTLFTLKDSSRSGGGKGGLLKLFGLGSRNTNSRSPAPIPSISVGG
RSADRRGIGIKSQDVRSRDTPRADRESTSSPRPRDRQRREERETVRETNPRPTSSPRPSP
TPSRRESHSLWSRSSMGQAVPAAAPTHIPTPIPATPAPAPTPAPAPASTGGSAFSRMSSI
SSLFRSHRRGTTPATPATNTLPAGGNPWMAALSETPTEINPSLFLDLPTPDSVIHAPAFP
ALREINLDSIQAPEPRSREEFLQYSVSLTLDTNTAHRRLTLAEGNTKATLQAAAQPYPGX
PQRFDGWTQVMCTSPLYGQRCYWEVEWRGRGSSMGVAYNAMIRKGSDARSGLGYNAQSWT
LELSDTCCSAMHDNEKKDIPVTYSPRLGLYLDLSTGTLAFYSVAESMTHLHTFRANFTQP
LYAAFGVGSGVGVGLDFALGQFSTSSDSIKICPM
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgagctctaaactgtggaccgaggagcagttcaactgccccgtgtgtctggatctcccc
aatgacccggtcaccatcccctgcgggcacagctactgcatgggctgcatcaaggactac
tggagcaaggacgaccctaagggggtctacagctgcccccaatgccggcagaccttctcc
cccaagccctccctgtccaggaacaccatgctggccgaggcggtggagcagctccgcaaa
ggggccctcaaggccgatgtgcgtgaatccatgcggatcgcccaaaaggggtcaaaaggg
aagccctcctcctcatcctcctcctcctcggcggtgccgtgcgacttgtgcaaaggggag
caacgagcggcggtcaagagctgcctgtcgtgcatgagctcgtactgcacggcccacctg
aagccccacaccaccaagaaggccctgagggcgcacgagctgatcgctcccaccgccaac
ctggcggagaagatctgcacccagcacaagtacctgcaggagttctactgccgccagtgc
aagatgttcgtctgctggctttgcaccagcaaccagcacaagggccacgagtgcgtttcc
accaaggtcgagcgctttgagaaacagaaagtgctgtcagagcttcagactgagaatcag
cagaggctgaaagaccgcgagctggagctgaaggacatgaagaagatgatggaggggatg
aagcgttctgcagacagggtgcacggcgacacggagcaggtgatggtggagctgcagcgc
tcggtggagcggctccaggagctgctggaggaggtgctggaccaggccggcatggagaag
atgggccaggcccaggaggtcatcgacagcctggaggccgaggtcaaggagatgaggagg
agggagaaggagatgagggacctggcgagctgcgaggaccacatccactatctggaggcc
tgtgagtccatgtgcaccccgctggagacatcggacctccccgccgtgacggtcaacccc
gaagcttcctttgagcctgcgcgggaagccatcctggacctcagggaccgagtggaggac
ctgtgcaaccaggagctgggcaagatcaccaaacaagtcaacgacaccactctgttcacc
ttgaaagactccagccggagcggaggggggaaaggagggcttttaaaattgtttggtctg
ggttctcgcaacacaaacagccgttctccagctcctatacccagcatctctgtgggaggg
cggagcgcagatagaagaggtataggcatcaagagtcaagatgtgaggagcagagacact
ccacgagcagacagagaaagcacaagctcacccagaccccgagacagacagaggagagag
gagagagagacagtgagggagaccaaccctagacccacttcaagccccagacccagcccc
actcccagccgcagagagtctcattctctctggagcaggtccagtatgggtcaggctgtc
cctgccgcggccccgacccacatccctactccgatcccagccacaccagctccagctcca
actccggcaccagctccagcatcaactggagggtcagctttcagtcggatgtcgtccatc
agcagcctgttccgctcccatcgacggggcaccaccccggctaccccggccactaacacg
ctgccagcaggaggaaacccatggatggctgctctgtctgaaacaccaacagaaattaac
cccagtctcttcttggacctgcccaccccggactctgtgatccacgctcctgctttcccc
gcactgagagaaatcaacctcgacagcatccaggccccagagccgaggagcagagaggag
ttcctacagtactctgtgagcttgacccttgacaccaacacggcccaccggcggctgacg
ctcgccgagggcaacactaaagccaccctgcaggcggcggcacagccctaccccggcnac
ccccagcgcttcgacggctggacccaggtgatgtgcacgagcccgctgtacggccagcgc
tgctactgggaggtggagtggaggggccggggctcctccatgggcgtggcctacaacgcg
atgatcaggaagggctcggacgcgcggtcggggctcggctacaacgcccagtcctggacc
ctggagctgtcggacacctgctgctcggccatgcacgacaacgagaagaaggacataccg
gtcacctactcgccccgcctgggcctctacctggacctgtccacggggacgctggccttc
tacagcgtggcggagagcatgacgcacctgcacaccttccgcgccaacttcacccagccg
ctgtacgccgccttcggggtgggcagcggagtcggggtgggtctggacttcgccctcgga
cagtttagtaccagctccgacagcataaagatctgtcccatgtga
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