Anoplopoma fimbria (sablefish): 129112247
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Entry
129112247 CDS
T09102
Symbol
lrrc4.1
Name
(RefSeq) leucine-rich repeat-containing protein 4
KO
K16351
netrin-G2 ligand
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129112247 (lrrc4.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129112247 (lrrc4.1)
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
NGL family
129112247 (lrrc4.1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
LRR_14
Ig_3
LRRNT
ig
LRR_9
V-set
VEGFR1-3_N_Ig-like
Ig_2
DUF6715
V-set_CD47
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
129112247
NCBI-ProteinID:
XP_054480226
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All DBs
Position
23:complement(6272467..6275855)
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AA seq
955 aa
AA seq
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MSLLGRVAVHRARKAALLCVVFLMARAWSSASLALAGAAVSQGPQGCPPQCSCSNQQGKV
VCTRRGLTRVPPGIPANTRHLNLMENAIEAVQADSFRHLHHLEVLQLGRNAIRQIEVGAF
NGLTSLNTLELFDNRLTVVPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG
ELRKLEYISEGAFEGLQNLKYLNLGMCNIRGDMPNLSPLKGLEELEISENHFPEIKPGSF
KGLRSLKKLWVMNSQITVIERNGFDDLSSLVELNLAHNNLSAVPHDLFSPLRYLVELHLH
HNPWNCGCEAVWLARWLREYIPTNSTCCGRCHAPVSMRGRQLVEVDRGEGAATQCSAPFI
ADAPRDLNISAGRVAEIRCRTAPMSSVRWLLPNGTILTHASSHPRISILNDGTLNFSNVL
AVDTGTYTCMVSNAAGNSNASAYLNVSAAELNTSNLSYFTTVTVEVLGPTTEMPKPRTTS
TTAAASGAGVAGGGGGVGPGTTTTTASPSVFQPVFISTPTVLLQSTNSPPGAAKTSVAPG
LQGATGKPGRSGPSLDEVMKTTKIIIGCFVAVTLMAAVMLIAFYKLRKRHQQRSTVADAR
TVEIIQVDEEDLPPPASAAQETALTLPEIRDHNSIHKLDFISHKTDYSFHKPKVEYKPQP
DFTLHKPKAEYTTYKPNMDFSSHKYIPDYSTHKSTTDFSLHRPKPDYSPFRQDYNPHKPK
AEYSQFKPDFGTHPKTKPDYSPFKPDYGTHPRQKTDLSPFKRDYSTQPKPKHDYSPLKSE
YNTQHKPKAEYSPFKPDFGTHPRPKPEYSPFQTDYSTQPKPKTDYNSQRSKTDSTYKPKD
PYSTHMTASDYSAFKTDFSPHKADYSAFKSDFSPHTQRPKLDYSPHKVDYSPHKMEYSTM
KPKYNTYKPTGHGAKWTDNNVVNSLPRTLPSTITAIAEPFVIKTHTKEKVQETQI
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcctggggcgggtagctgtgcatcgtgccaggaaagccgccctgctctgtgta
gtcttcctgatggcgcgagcgtggagcagcgcctccctggccttggcgggggcggcggtg
tctcagggaccccagggctgtccacctcagtgttcctgtagtaatcagcaggggaaggtg
gtgtgcactcgacgtggcctcacccgtgtgccccccggcattcctgccaacacgcgacac
ctcaatctaatggaaaacgccattgaggcggtgcaggctgactccttccgccacctgcac
caccttgaggtgctccagcttgggcgaaatgccatacggcagattgaggtgggcgcgttt
aatggactcaccagcctcaacacactggagctgtttgacaaccggttgacggtggtgccc
agtggggcctttgagtacctgtctaaactaagagaactgtggctgaggaacaaccccatt
gaaagtataccctcctacgccttcaaccgggtgccctctctcatgcgactggacctgggc
gagttacggaaactggagtacatctcagaaggagcgtttgagggcctacaaaacctcaag
tacctcaacctgggcatgtgcaacataaggggtgatatgccaaacctgagtccgctcaag
ggcctggaggagctagagatctctgaaaatcacttcccagagataaagccaggctctttc
aaaggcctgcgctcactgaaaaagctctgggtgatgaactcacaaatcacagtgatagag
cgcaatggttttgatgacctttcttcgttggtggagcttaatcttgcccataacaatctg
agcgctgtgccacacgacctgttctccccgctcaggtacctggtggagctccatctccac
cataatccttggaactgtggctgcgaggctgtatggttagcacgctggctaagggagtac
atcccgactaactcgacttgctgtggacgctgtcacgcacctgtcagcatgagagggcga
cagctggttgaggtggaccgaggggagggtgctgcaacccaatgttctgcaccattcatt
gctgatgcaccaagggacctgaacatctcagcggggagagtggctgagattcgttgccgc
acagccccaatgtcttcagtgcgctggctcctgcccaatgggactatcctgacacatgcc
tccagtcatccgagaatatcaatcctgaatgacggcaccctgaatttctcaaatgtcctg
gctgtagacactggcacttatacctgcatggtgtccaatgcagcagggaactccaacgct
tcggcctatctcaatgtgagtgcagctgagcttaacacatccaacctgagttactttacc
acagtgactgtggaggtcttggggccaaccactgagatgcccaaaccaagaaccacctcg
actacagctgctgcatcaggggctggggtggctggaggaggaggaggggtaggcccaggg
acaacaactacaactgcctccccttccgtctttcagccagtcttcatctccacaccaact
gtgctgctgcaaagcaccaacagccctccaggtgcagctaagacatctgtggcgccagga
ctccaaggtgcgactggcaaaccaggcaggtctggccctagcctggatgaagtgatgaag
acgactaagatcataataggctgctttgtagcagtgacactgatggctgccgtcatgctc
atcgccttctataaattgagaaagcgccaccagcagaggagcacagtggcagatgctcgc
actgtggagattatccaggtggatgaggaggaccttcctccgccagcgtctgcagctcaa
gagacggctctcacattgcctgaaatccgggaccataacagcatacacaaactggacttt
atcagccacaagactgactatagctttcacaaacccaaggtcgaatacaaaccccagcct
gatttcacccttcataagccgaaggctgagtataccacatacaagccaaatatggacttc
agcagccacaaatacatcccagattacagcacccacaaatctacaacagattttagcctt
catagaccaaagcctgactacagcccatttagacaggactacaaccctcacaaacctaaa
gcagaatacagccaattcaaaccagattttggcactcacccaaaaactaaaccagactac
agccccttcaaaccagattatggcactcatcctaggcagaaaacagacctcagcccattc
aaacgagattacagcacccaaccaaaacctaaacatgactacagcccattaaaatcggaa
tacaacacacagcataaacctaaggctgaatacagtccattcaagccagactttggcact
catccaagacctaaacctgaatacagcccatttcagactgactacagcactcaacccaaa
cccaaaacagactacaattcccagagatctaaaacagacagtacctacaaacccaaggac
ccttactccacccatatgactgcaagtgattacagcgccttcaagaccgacttcagtccc
cacaaagcggattacagcgccttcaagtctgacttcagtccacacactcagagacctaaa
cttgattacagtccccacaaagtggactacagcccccataaaatggagtacagcactatg
aagcccaaatataacacctataaaccaactggccatggggctaaatggacagacaacaat
gttgtgaactctttgcctcgaaccttgcccagcaccatcacagcgattgctgagcccttt
gtcataaaaactcacaccaaggagaaggtgcaggagactcaaatttaa
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