Anoplopoma fimbria (sablefish): 129112271
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Entry
129112271 CDS
T09102
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129112271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129112271
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129112271
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129112271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129112271
NCBI-ProteinID:
XP_054480271
LinkDB
All DBs
Position
23:1253878..1266123
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AA seq
559 aa
AA seq
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MFGANRKKFMEGGIESDYADDSSLYYTQQSMFPPHRPDKDMLASSSASSTGQLSQLGASL
YGPQSALGFPMRGMNSSAAPQLSRSGLNQSANQLPSHASTANTGTMHTPPSPSRGILPMS
TRSVMNHNQQVGGPTGQSGGMGGVGVERGGGGGRSSSMGSPSRSSPSIIGMPKQQQTRQP
FTINSMSGFGVNRNPGYNMNNSLSNNIFNGTDGSENVTGLDLSDFPALADRSRRDGNSNP
TPLLNPLAGRAPYVGMVTKPSSEQSQDFSIHNEDFPALPGPNYQTKDPTSTSEDSKTRSH
LLTRPIFSDCFFPPFLSNQNLNSSGKPTSNSDGPKFPGDKSSAPSNNNQQKKGIQVLPDG
RVTNIPIGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFAS
PWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLSRYGEDLLFYLYYMNGGDLLQLLAA
VELFNRDWRYHKEERVWITRAPGMEPTLKTNAYERGTYYFFDCLNWRKVAKEFHLEYEKL
EERPHVPSTFNYNPAQQAF
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctaaccggaagaagtttatggagggcgggatagagagcgattacgcggac
gactccagcctctactacacccaacagtccatgttccctcctcaccgccctgacaaagat
atgctggcgtcttcctctgcctcctcgacgggtcaactgtcacagctgggagccagttta
tatggcccacagagtgctttggggtttcccatgcggggtatgaacagcagtgcagcacct
cagttaagtcgaagtgggttgaaccagtctgccaaccagctccccagtcatgccagtaca
gccaacactggcacgatgcacacgcctccctcaccgagcagggggattctgccaatgagc
acccggagcgtgatgaaccacaaccagcaggtgggggggccgacggggcagtcgggcggg
atgggaggcgtgggggtggagaggggaggcggaggagggaggagcagcagcatggggagc
cccagcaggtcgtcacccagcatcatcgggatgcccaaacagcagcaaacacggcagcct
ttcaccatcaacagtatgtcaggtttcggtgtgaacagaaatccaggctacaacatgaac
aactccctatccaacaacatcttcaatggcacagacggcagtgagaatgtgacggggttg
gacttgtcggacttcccggcgttagcagacaggagtcggagggacggaaactcaaacccc
accccgctgctcaacccgctggcaggtcgggctccttacgttggcatggtaaccaaaccg
tccagtgagcagtcgcaggacttctccatccacaacgaagacttcccagctctccctggt
ccaaactaccaaacaaaagaccccaccagcaccagcgaggacagcaaaacgcgctctcac
ctcctgactcgtcccattttttcggattgttttttccctccgtttttgtccaatcagaat
ctgaactcgtcgggaaagcccacctctaactcggacggccccaagttccccggcgacaag
agctctgcgcctagcaacaacaaccagcagaagaaagggatccaggtgcttcctgacggg
cgagtgaccaacatcccgatcggcatggtaacggaccagttcgggatgatcggcctgctg
acgttcatccgggcggcggagacggaccccggcatggtccacctggcgctgggctccgac
ctcacaacgctcggcctcaacctcaactcgcccgagaatctctaccctaagtttgcgtct
ccctgggcgtcggctccgtgtcgaccgcaggacatagacttccacgtcccctcagagtat
ttaaccaacatccacataagggacaagttagcggccatcaagttgtctcggtatggtgaa
gatctcctgttttatctttactacatgaacggaggagacctactacaactcctggcagca
gtagaactgtttaacagggactggaggtaccataaagaggagcgggtttggatcaccagg
gctccgggtatggagcccacgctgaagaccaacgcctacgagagagggacctactacttc
ttcgactgcctcaactggaggaaagtggcaaaggagtttcatctggagtacgagaaacta
gaagagcgacctcacgttccctccacattcaactacaatcctgcccagcaggccttctga
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