Anoplopoma fimbria (sablefish): 129112306
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Entry
129112306 CDS
T09102
Symbol
parpbp
Name
(RefSeq) PCNA-interacting partner
KO
K27412
PCNA-interacting partner
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afb03400
]
129112306 (parpbp)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
129112306 (parpbp)
TLS (translesion DNA synthesis) factors
Other TLS factors
129112306 (parpbp)
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Gene cluster
GFIT
Motif
Pfam:
GreA_GreB_N
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
129112306
NCBI-ProteinID:
XP_054480330
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All DBs
Position
23:4462398..4476106
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AA seq
594 aa
AA seq
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MEALGDRLKVMVKIFRRECHRVINSERTTIHGADGMLMLLQLAIAEVNKQHAGEFKVALS
DVLMAWKHLLLDKLHLPPPNSARLENYDLILEAYESSLKRSNTVDLVDILSMYEQLRLVD
SDPGEPVSPILLFEFLSGNMEVSELPDSSVPSTPSSKSRGCSSQVKMAVRRVFCSYLNLL
VNAKNDMALALTLDVPSRTLGRQAFTDIKHAAHNNNTSLFLAVTSFVRAIQLGGKGYAPA
ESDPLRKHVKGLSDFVQFLDNLEEILGEIPNPSVCGARLVSAIRAALVKGRSSEDPVYAA
AEETTKELKERICQLHQIQKQTANGIGTGISPARPKAYAVNHCTAYGGRDTVKVLMALLD
EEALTPPCRNKADLLSEDQPVLSGAEATCILSLFRSPEVSTGCSPEPLKNRVQSRLDLLK
PKAKERGIRSQFACTYKDEEMPLNRVLEFPSSSQVPTCVHPAPKHHTIPAVDEECSSDVE
ETTKVFPAKSTSECPNKEQSGVRRGAALGPRSGNAQNRVAGPANRKKTGTEAQRKGNKRK
QVDSDQHGGSENEPPEKKQLTCVPVKVPGKNVSKASSKKKLIAGQGKLTSFFRL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggaggctttgggagatcgtctaaaggtgatggttaaaatcttcaggcgagagtgccac
agggttataaactctgagaggaccaccattcatggagctgatggcatgctaatgttgctg
cagctggccatagcagaagttaacaagcagcacgctggagagttcaaagtggctctgagt
gatgtcctgatggcctggaaacacttactgctagacaaacttcacctgccaccccccaac
tctgcacgcttggagaactatgatctcatcctggaggcttacgagtcctccctgaaacgc
tccaacaccgtggacctggttgatatcctctccatgtacgaacagttgagactagtggac
tcagacccgggggagcctgtgagcccgatcctgctgtttgagttcttatctggaaacatg
gaggtctcagagttgccagactcttcagtcccatcaacaccatctagtaaaagcagaggc
tgcagctcacaggtgaaaatggccgtcagaagggttttctgctcctatctgaatctgctt
gtgaacgccaagaacgacatggccttggcgctgaccctcgacgtccccagtcgcactctt
ggacgacaggcatttaccgacatcaagcatgccgcgcacaacaacaacacctctctattc
ttggctgtgacatcttttgtgagggccatccagctcggagggaagggctacgctccagct
gagtctgacccactgaggaagcatgtcaaaggcctgtctgactttgtccagtttctagac
aacctggaagaaattctgggagagattcccaacccaagcgtgtgtggagccaggctggtc
agcgccatcagggcggcgctggtgaagggacgcagcagtgaagacccggtgtacgctgca
gccgaggagacgacaaaggagctgaaggagaggatctgccagctacaccagatccagaaa
cagaccgctaatggaatcgggacggggataagccctgccaggccaaaggcttacgcagtc
aatcactgcactgcatacgggggtcgggacaccgtgaaggtgctgatggctctgctggat
gaagaggcgctgactccaccgtgtcggaacaaagcagaccttctgtctgaggaccagccc
gtcctcagtggagccgaggcgacctgcatcctcagcttgttcagatcccctgaagtgtct
actggatgttctccagaacctctaaagaaccgagtccagagccggctagacctgctcaaa
cccaaggccaaagaaagaggaattcgatcccagtttgcatgcacatacaaagatgaagaa
atgcctctcaaccgtgtgctggagttccccagcagcagccaggtccctacctgtgtgcac
ccggcacccaaacaccacaccatcccagctgtggatgaagagtgcagctctgatgtggag
gagacgaccaaagtctttccagccaagtccacttctgaatgcccgaataaggagcagagc
ggcgtgcggcggggggctgctctcgggccaagaagtggaaatgcccaaaacagagttgcg
ggccccgccaatagaaagaaaactggcactgaggcgcagagaaagggcaacaagaggaag
caggtggattctgaccaacatggaggatcagagaacgagcctccggagaagaaacagctc
acttgtgtccccgtcaaagtgcctggcaagaatgtcagcaaggcctccagtaagaagaag
ctgatagctggacagggaaagctcaccagcttcttcagactctaa
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