Anoplopoma fimbria (sablefish): 129112375
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Entry
129112375 CDS
T09102
Symbol
sox5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129112375 (sox5)
Transcription factors [BR:
afb03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
129112375 (sox5)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
129112375
NCBI-ProteinID:
XP_054480423
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All DBs
Position
23:complement(14400909..14486814)
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AA seq
770 aa
AA seq
DB search
MLSVPAFLMSSKRPASPYGGTDGEVTMATSRQRMEDEDGEGLGGVIHLPLVSYCGKVSPR
SPPNRNLDSPPNTEQDGTKGSSLSPYPQHNATSPGKEDGGGGGRPCSDGGSATGTLGTPE
RRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGHIGEIKGTAD
SLAEKERQLMGMIGQLSSLREQLLAAHEEQKKLAASQMEKQRQQMELAKQQQDQIARQQQ
QLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLMPPGFNYKPGCS
DPYPLQLIPTTMAAAAAAASPGLGQLQLQQLYAAQLAAMQVSPGXKQHGGSLPPQGNLGT
HSPPTNTHSQSEKGRSSPLPNKAKDSEGAQPLNLSAKPKASESKSPNSPPTSPQVAAAAA
AKLGSAGSMKHSVAPSSIGGPPSRASSIADLLSSLSTTAYLNDHEAVTKAFAEARQMKEQ
LKREQQVLDAKVAAVSNLSLNNGRSDKDKAALESLSQQLKQQAEDKFSHAMLDFTMSGDS
DGSPSVSDSRIFREARGRGSAEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILG
SRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRS
RRQEMRQYFSVGQQGQHPLSSAGVVYPGALSMAGIPSPQMPSEHSSMSSSPEPNANHHQN
PHMAGLKGDEPRIKEEELRLDDSNGDVYDDFDYEDEEADYTSDNDNHITQ
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgctctcggttcctgcgtttctgatgtcttccaagcgaccagcctctccatatgggggg
acagatggagaggtaaccatggcaaccagcagacagcgaatggaggatgaggatggcgag
ggactgggcggtgtcatccacctccccctggtctcctactgcggcaaggtgtcccctcgc
tcgccccccaaccgcaacttggacagcccccccaacacggagcaggacggcactaagggg
agctctctgagtccttacccccagcacaatgctacctcaccgggcaaagaggacggcgga
ggcggagggcggccctgcagcgacggcggctcggccacgggcaccctggggacgcccgag
agacgcaagggcagcctggcagacgtggtggacacactgaaacagcgcaagatggaggag
ctgatcaagaacgagccagaagaggcccccagcattgagaggctgttgtcaaaggactgg
aaggataaacttttggccatgggctcagggcacatcggagaaattaaaggtaccgcggac
agcctggcggagaaagagcgccaactcatgggcatgatcggccagttgagcagcctgagg
gagcagctcctggcggcccacgaggagcagaagaagctggccgcctcgcagatggagaag
cagaggcagcagatggagctggccaagcagcagcaggaccagattgcccggcaacagcag
cagcttctgcagcagcaacacaaaatcaacctcctgcagcaacaaatccagcaggtccag
ggccagctccctccgctgatgatccccgtctttcctccggaccagcggactctggcggcg
gcggcggcccagcaaggcttcctcatgccccctggcttcaactacaagcctggctgcagc
gacccctaccctctccagctcatccccacaacaatggctgccgccgccgccgctgcctcg
ccaggcctgggacaactccagctccagcagttgtacgcagctcagctggcggccatgcag
gtttccccggggngcaagcagcacggaggcagcctgccaccgcaaggcaacctgggcaca
cactccccgcccaccaacacacactcacagagcgagaagggccgcagctccccactacca
aacaaggccaaggacagtgagggtgcacagccactgaacctgtcggccaagcctaaggca
tccgagagcaagtcacccaactcccccccaacttccccacaggtcgctgctgccgctgcc
gccaagctgggctccgccggctccatgaagcacagcgtcgccccctccagcatcggaggt
ccaccgtccagagctagctcgatagcagacttgttgtcctcgctgtccacgaccgcctac
ctgaacgaccacgaggctgtgaccaaggccttcgccgaggcccggcagatgaaggagcag
ctgaagagagagcagcaggtcctggacgccaaggttgccgccgtcagcaacctgagcctc
aacaatggacgctcggacaaggacaaggctgccttggagagtctgagtcaacagctgaag
cagcaggcagaggacaagttcagccacgccatgctggacttcaccatgagcggagactct
gacggctcccccagcgtgtcagactccagaatattccgggaggcccggggtcgtggcagc
gccgagccgcacatcaagcggccgatgaacgccttcatggtttgggccaaggacgagagg
agaaagatcctgcaggccttccccgacatgcacaactccaacatcagcaagatcctcggc
tcccgctggaaagccatgaccaacctggagaagcagccctactatgaggagcaggcccgc
ctcagcaagcagcacctggagaaataccccgactacaagtacaaaccgcgacccaaacgc
acctgcctggtggacggcaagaagctgcgcatcggcgagtacaaagccatcatgaggtcc
cgcaggcaggaaatgagacaatacttcagtgtggggcagcagggccagcatcccttgtcc
tccgcaggcgtggtttacccaggtgccctctccatggccggaatcccctcaccccaaatg
ccctcagagcactcaagcatgtccagcagccccgagcccaacgccaaccaccaccagaac
ccccacatggctggcctgaagggggacgagccacgcatcaaggaggaggagctgcggctg
gacgacagcaacggagacgtgtacgacgacttcgactacgaggacgaagaagcagattac
accagcgataacgacaaccatatcacccaatag
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