Anoplopoma fimbria (sablefish): 129112614
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Entry
129112614 CDS
T09102
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129112614 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
129112614 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129112614 (lsm8)
03041 Spliceosome [BR:
afb03041
]
129112614 (lsm8)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129112614 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
129112614 (lsm8)
Spliceosome [BR:
afb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129112614 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
129112614
NCBI-ProteinID:
XP_054480759
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All DBs
Position
23:complement(1578116..1583297)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccctggagagctacatcaaccgtactgtggccatcgtgacgtcagacggc
agaatgatcgtgggcactctgaagggcttcgatcagaccatcaacctgatcctggatgag
agtcacgagcgggtgttcagctccagtcagggggtggagcaggtggtgctgggactctac
atcgtcagaggagacaacgtggccgtgatcggagagattgacgaggagacggactccact
ctggatttaggaaacatcagagccgagccgctcaactctgttgtccactga
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