Anoplopoma fimbria (sablefish): 129112824
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Entry
129112824 CDS
T09102
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129112824 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129112824 (lamb1b)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Lipase_GDSL
Motif
Other DBs
NCBI-GeneID:
129112824
NCBI-ProteinID:
XP_054481032
LinkDB
All DBs
Position
23:4021031..4050633
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AA seq
1781 aa
AA seq
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MSLIIPFITILALWSPVSLQQWPDFPDVCTEGSCYPATGDLLIGRAHKLSVTSTCGLKKP
ERFCIVGHLEEEKKCFVCDSRRMFDEDSNQVSHTIDNLVTTFAHNRLKTWWQSENGVENV
TIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKTWQVYRYFAYDCKSSFPDVASGP
MVKVDETVCDSRYSDIEPSTEGEVIFRVLDPVFKIEDPYSLKIQNMLKITNLRVKFLMLH
TLGDNLLDSREEVTEKYYYSLYDMVVRGNCFCYGHASECAPIDGEPSTAEGMVHGRCVCN
HNTEGLNCERCQDFYHDLPWRPAEGRNSHACKMCECNQHSTSCHFDLAMYVTTGNMSGGV
CDDCRHNTVGRQCEQCAPFYFQHPNRDLRDPNVCEACNCDPAGSLQGGLCDSHTNVVAGL
ISGQCRCKANVEGERCDHCRQGHHGLGQGPDGCLPCTCNLLGTLPGGNCDSETGKCFCKR
LVDGHSCDECLPQHWGLSNDMDGCRSCDCDQGGAVNNNCDPHSGQCVCREHMFGRRCDRV
ESGFYFITLDHYTYEAEDAKHGPGVTVVPRPYPLDRSPTWTGMGFVNVPEGAYLEFTINN
VPESMDYDVLIRYEPQLPEQWEQVHMQVQRPVFNPPNYSGHCGNSLQSGDQQSISLPPGS
RHVLLVRPVCFEKGLNYTIRLTLPLYSSVSDVQSPYTLIDSLVLIPRIRELDMFHGIDGE
GAWDTFQRYRCLESSQSVVKSPLTDICNDYIFSVSALLHQGAMACQCDPQGALSAMCEPS
GGQCQCRPNIVGRNCEHCAPATFLFSPAGCRPCGCDPLGSVSAFCHEATGQCECVPGAMG
RQCSHCLPGFWGFPQCRVCHCNGHSEYCHPQTGECQGCRDFTTGHHCERCLNGYHGDPEL
GSGGHCRPCMCPDGPRSGRQFSDNCYLLDNSNQLVCVCSPGYKGARCDECAPGYFGNPLV
PGGSCLPCQCNSNIDMHDPGSCDAQTGACLKCLYHTEGYGCQDCKQGYYGNAGTQRCWKC
MCNSVGTSPRACSSPDECQCDQRSGQCPCLPNVVGQNCDSCATDTWNITSGTGCQRCDCD
PVHSFGSSCDEITGQCLCRPGFGGKTCRECREFFWGDPEVKCHACDCDSRGISSEQCHRA
TGQCTCVEGVSGPRCDICARGYQGEFPTCEPCHQCFAVWDTVVGELTNQTQRLEAQVTQL
QISGVTAPYKDLVSSLERNAKAVREIVENNPAAVKLEQIQDLLHQITGVMSYLNGQLNTT
EETLNDLHSDANATDANLDTLTDEANQLELSVQELKQQVYNAKNANIQGAMDTITDAHRQ
SMMAELHANASTSNPGNTVEESATVRKATEDKLSSSQKEFDRKHQRNSQKLDKLSTELDT
FDLSPLSEKTCGGAAEGDACSGSLCGGLGCVGEDGRPQCGGEGCEGLVTTSQTALKSGKD
LDQEILAASQEVDKLSRMVWEANNRANKAKVNALEVLVKSNRSKERVEQSNQQLRNLIKE
IRDLLNNEKADVSVIEAVANEVLALEMPTSTEKLQELTKEIREKVDTLTSVETILSQSAE
DILAAEMLLIQAKAASEEASTVKESADVVKAALDETERAQSVAMDAIQLAKNNTKGTLDL
LVSVESETAMSELKLGNTTGRLVQLEREVGLLRQNNLVMNRLVETSDQMTDQARLNAEEA
QQEFDMEVKDKFVEVEDLVEDKGESVLQAKRRADELQKEAKELLAQSSSKLQRLTELEGS
YEANQLTLEAKAAELVELEQTVRQILDEINYKVTMYSTCLG
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcataatcccctttataacaattttggccctgtggagccccgtcagcctgcag
caatggcctgacttcccggatgtctgcacagagggcagctgctacccggccacaggtgac
ctgctgatcggccgagcccacaagctctctgtcacctccacctgcgggctcaagaagccg
gagcgcttctgcatcgtcggacatctggaggaggagaagaaatgtttcgtgtgcgactcc
aggcggatgttcgacgaggacagcaaccaggtcagccacaccatcgacaacctggtcacc
accttcgcccacaaccgcctcaagacctggtggcagtcggagaacggtgttgagaatgtg
accatccagctggacctggaggccgagtttcacttcacgcaccttatcatgaccttcaag
acgtttcggccggctgccatggtgatcgagcggtccatggactttgggaaaacgtggcag
gtttatcgttacttcgcctacgactgcaagtcgtccttccccgacgtggcctccgggccg
atggtcaaagtggacgaaaccgtctgtgactcccgatactcggatatcgaaccgtccaca
gagggagaagtgatatttcgggttctggacccggtctttaagattgaggacccctacagc
ctgaagatacagaacatgctgaagatcaccaacctccgggtgaagttcctgatgctccac
acgttgggcgacaacctgctcgactctcgcgaggaggtgacggagaagtactattactcc
ctctacgacatggttgtccgcggcaactgcttctgctacggtcacgcctccgagtgcgcc
ccgatcgacggagagccgtccacagctgagggcatggtccatggccgctgtgtgtgtaat
cacaacaccgagggactaaactgtgagcgctgtcaggacttttaccatgatctgccttgg
agacccgctgagggccgaaacagccacgcctgcaagatgtgtgagtgtaaccagcactcc
acatcctgccacttcgacctggccatgtacgtgacgacgggcaacatgagcggaggcgtg
tgtgacgactgtcgacacaacacggtgggccgacagtgcgagcagtgtgcgcccttctac
ttccagcacccgaaccgcgacctgagggaccccaacgtctgcgaagcgtgtaactgtgat
ccggccggctctctgcagggcggactgtgtgactcgcacaccaatgtggtagccggtctg
atctcaggccagtgtcgatgcaaagccaatgtggagggggagcgctgtgaccactgcaga
cagggacaccacggactgggacagggccctgacggctgcctgccttgtacctgtaacctg
ctgggcactttacctggagggaactgtgattcggaaacaggaaagtgcttctgcaaacgc
ctcgttgacggacatagctgcgatgagtgtctgcctcagcactggggtctgtccaatgac
atggacggctgcagatcatgtgactgtgatcagggcggggccgtcaacaataactgtgac
cctcactcaggacagtgtgtgtgcagggagcacatgtttggacgacgctgcgatcgggtc
gagtccggcttctacttcatcactctggatcactacacctacgaggcagaggatgccaag
catggacctggtgtgacagtggtaccgaggccttatcctttggatcgcagtcctacgtgg
accggtatgggctttgttaatgttccagaaggagcctacttagagttcaccatcaacaac
gtcccagagtccatggactatgacgtccttattcgctatgagccgcagctgccagagcag
tgggagcaggttcacatgcaagtgcagcgtcccgtcttcaaccctccaaactactctggt
cactgcggcaactccctccagagtggagaccagcagtccatctctcttccacctggatcc
agacatgtgttgctggtgaggccggtgtgtttcgagaaaggactgaactacacgatccgt
ctcactctgcctctctactcgtcagtcagtgacgtccagagcccctacacactcatcgac
tctttggtcctgataccccggatcagggagctggacatgttccatgggattgatggtgaa
ggagcgtgggatacgttccagcgctaccggtgtctggagagcagccagagtgtcgtcaaa
agccccctgactgacatctgcaacgactacatcttcagcgtctctgctctgctgcaccaa
ggagccatggcatgccagtgtgaccctcagggtgctctcagcgccatgtgtgagcccagt
ggaggtcagtgccagtgtcgacccaacattgtcggcaggaactgtgaacactgtgccccc
gctacgtttctgttcagcccggccggctgcagaccttgcggttgcgaccctctgggctcg
gtcagcgccttctgccacgaggcgacaggccagtgtgagtgtgtcccaggggccatgggg
cgccagtgttcccactgcctgccaggcttctggggcttcccccagtgcagagtgtgccac
tgcaacggccacagcgagtactgccaccctcagactggagagtgtcagggctgcagagac
ttcaccaccggacaccactgcgagaggtgtctaaacggttaccatggtgacccggagctt
ggatcaggtggccactgtcgcccctgtatgtgccctgatggtccgcgcagtggacgccag
ttttctgacaactgttaccttctggataattcaaaccagctggtgtgtgtgtgcagccct
ggctacaaaggtgccaggtgtgacgagtgtgcccccggttattttgggaaccctctggtg
cccggtgggagctgcctgccctgccagtgtaacagcaacatcgacatgcacgacccgggg
tcctgtgacgctcagacgggcgcctgtctcaaatgcctgtaccacactgagggctacggt
tgtcaggactgcaaacagggttactacggcaatgctggcactcagagatgctggaagtgc
atgtgtaactcggtgggtacatcacctcgggcctgttcgtcccctgatgagtgtcagtgt
gatcagcgtagcggtcagtgtccctgtctgcccaacgtggtcggccagaactgcgactcc
tgtgccaccgacacctggaacatcaccagcgggacgggctgccagcgctgcgactgcgac
cccgtccactccttcggatcctcctgcgatgagatcacaggacagtgtttgtgcagaccc
ggctttggtggaaagacttgtcgggagtgcagagagttcttttggggggatccagaggtc
aaatgtcatgcttgtgactgcgactctcggggaatctccagcgagcagtgccaccgtgcg
accggccagtgtacctgtgtggagggcgtgtccggaccacggtgtgacatttgcgccagg
ggctaccagggtgagttccccacctgtgaaccctgtcaccagtgctttgctgtctgggac
acagtggtcggcgagctgaccaatcaaactcagcgccttgaggcccaagtaacacagctc
cagatcagtggggtgacggcgccatataaagacctggtcagcagcctggagaggaacgcc
aaagccgtcagagaaatagtggagaacaaccctgcagcagtgaagctggagcagatacag
gatctgctgcatcagattaccggtgtgatgtcctacctaaacggacagctgaacactaca
gaggagaccttgaacgatctccacagtgacgccaacgccactgatgcgaacttagatacg
ctgacagatgaggccaaccagctggagctgagtgtccaggagctgaaacagcaggtgtac
aacgccaagaacgccaacatccagggtgccatggacaccattacagatgcacacaggcag
tctatgatggctgagctccacgccaacgcgtccaccagtaatcctggaaacacagtggag
gaatcagccacagtacggaaagcaacggaggacaaactgagcagctctcagaaggagttt
gatcgcaagcaccaaagaaactcgcagaagctggacaagctgtccactgagctggataca
tttgacctgtcaccactaagcgagaagacatgtggaggtgcagctgaaggggacgcctgc
tccggctccctctgcggtggtttgggttgcgtcggcgaggacggaaggcctcaatgtggc
ggagaaggatgtgaaggcctcgtcaccacttcccaaactgcactcaaatccggcaaagac
ctggaccaggagatcctcgcagcgagtcaggaagtggacaagctctccaggatggtgtgg
gaagccaacaaccgcgccaacaaggccaaggtgaacgctctggaggttctggtcaaatcc
aaccggagcaaagagagagtggagcagagcaaccagcagctccgtaacctcatcaaggag
atacgagacctgctcaacaatgaaaaggcagatgtttcggtgattgaggcggtggccaac
gaggtgttggctctggagatgccgacctcgaccgaaaagctgcaggagctgacgaaggag
atcagggagaaggtcgacactctgaccagcgtggagacgattctcagtcagagcgctgag
gacatcctggctgcagagatgctgctgatacaggccaaggctgccagtgaggaggcgtct
accgttaaggagtcggcagatgtggtgaaggcggctctggatgagactgagcgtgctcag
agtgtcgccatggacgccatccaactggccaaaaacaacacgaagggaacactggacctg
ctggtctctgtggagtcagagacggccatgtcggagctgaagctcggtaacaccacgggt
cgtctggttcagctggagagggaggtcggcctgctgagacagaacaacctggtgatgaac
cgcctggtggagacgtccgaccagatgaccgaccaggccagactgaacgcagaggaggcc
cagcaggagtttgacatggaggtaaaagacaaatttgtggaagtggaggacctggtggag
gataaaggggagtcagtgctgcaggcgaagaggagagcagacgagctgcagaaggaagcc
aaagagctgctcgctcagagcagcagcaagctgcagagactcacagagttggaaggttcc
tacgaggccaaccagctcaccctggaggccaaagctgcagagctcgtggagttggagcaa
accgtccgccagatcctggatgagatcaactacaaagtgacgatgtacagcacctgtctg
ggatga
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