KEGG   Anoplopoma fimbria (sablefish): 129113164
Entry
129113164         CDS       T09102                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
afb  Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:afb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:afb04131]
    129113164 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129113164 (copb2)
Membrane trafficking [BR:afb04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    129113164 (copb2)
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   129113164 (copb2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz WDR55 WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st DSE1_N ASA1 ANAPC4_WD40 NBCH_WD40 Beta-prop_WDR41 Beta-prop_HPS5 PEP5_VPS11_N Beta-prop_SCAP Beta-prop_IFT140_1st CFAP251_N Beta-prop_NOL10_N Beta-prop_DCAF4 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_Aladin TRM82_WD Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_LRRK2 Beta-prop_WDR35_TULP_N PAC11 Beta-prop_ACSF4 TPR_ZFYVE26 GEMIN8
Other DBs
NCBI-GeneID: 129113164
NCBI-ProteinID: XP_054481319
LinkDB
Position
3:23789814..23796910
AA seq 943 aa
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELVRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMSEKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNATMVGKLAEGAE
KDGKNNVAFMTYFLQGNLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRENLAKI
NTKAAESLADPTEYENLFPGLKEAFAAEHYLRESCIGTSRPAKDYPLVTLNEDRNILEEA
QGYEPKGTFIPAVSKTKDSEESVAAAPVAAGEPAVTSSRPEPAAPTAVDKEEEEEEEEEE
EESPEFSQSQKETLDELEVDLDNMELDDIDTTDVNLDDDFLDD
NT seq 2832 nt   +upstreamnt  +downstreamnt
atgcctctgaggctggacatcaagcggaggctgacagctcggtcagaccgggtgaagagt
gtggacctccacccaacggagccatggatgctggctagtctgtacaacggcagtgtctgt
gtgtggaaccacgaaacacagactcttgtcaagacctttgaagtatgtgacctccctgtc
cgagcctcaaagtttgtggcaagaaagaactgggtcattacaggagcggatgacatgcag
atccgagtgttcaactataacaccttggagcgtgtccacatgtttgaggcccactctgac
tacatccgttgcatcgctgtccatccgacccagccctatatcctcaccagcagtgatgac
atgttgatcaagctatgggactgggagaagaagtggtcatgcagccaggtgtttgagggc
cacactcactatgtcatgcagattgtcatcaaccccaaggacaacaaccagtttgccagt
gcctccctggataggacgattaaggtttggcaactaggctcttcgtctcccaatttcact
ttggagggtcacgagaaaggggtcaactgtattgactactacagtggaggagacaagccc
tacctcatctcaggggctgatgaccgccaagtaaagatctgggactaccagaacaagacc
tgtgttcagactctggagggccacgcccagaatgtttcttgtgtcagcttccaccctgag
ctgcccatcatcattactggatcagaggacggtacggtgcgtatctggcactcaagcact
taccgcctggaaagtactctgaactatggcatggagagagtgtggtgtgtgtgcggcctc
aggggctccaacaatgtggcgctgggctacgatgaaggcagcatcattatcaaggtgggt
cgagaagagccagcaatgtctatggatgcaaacggaaaaatcatctgggctaaacacagt
gaggtacagcaagccaacctgaaggccatgggtgacgctgagatcaaggacggagagagg
ctgccattggctgtcaaagacatgggaagctgtgagatttacccccaaaccattcagcat
aaccctaatggaaggtttgttgtggtgtgcggagatggagagtatatcatctatactgcc
atggctttgaggaacaagagcttcggctcagcacaggagtttgcctgggcacatgactca
tctgaatatgccatcagagagagcaacagcattgtcaaaatcttcaaaaatttcaaggaa
aagaaatcgtttaagcctgactttggagctgaagggatctatggaggtttcttgcttggg
gtgaggtcagtgaatggcctggcattttatgactgggagaacaccgagctggtccgccgc
attgaaatccagcccaaacacatcttctggtcagattcaggtgaactggtctgcatcgct
acagaggagtcctttttcattctgcgttatatgtcagaaaaagtagctgcttctcaagag
aacaacgaaggagtgactgaggatggtattgaagatgccttcgaggtccagggagaaatc
caggagattgttaaaactggactgtgggtaggagactgcttcatctacaccagctctgtg
aacagactcaactactatgtaggaggagagatcgtcactattgctcaccttgacagaacc
atgtacctgctgggttacataccaaaagacgaccgtctgtaccttggagacaaggagctc
aacattgttagctactccctgctggtctctgtcctggagtaccagactgccgttatgagg
agggactttggtatggctgacaaggtgcttcccacaattcctaaagagcagcggaccagg
gtcgcccatttcctggagaaacagggcttcaagcagcaggcgctggctgtgtccacagac
ccagaacataggtttgagctggcgctgcagctgggagagttgaagatcgcctaccagctg
gctgtggaggcagagtcagagcagaagtggaagcagttagcagagctggctatcagtaag
tgccagtttggcctggcccaggagtgcctgcaccatgctcaggattacggtggcctgctc
ctcctcgcaacagcctccggtaacgctacaatggtgggcaagctggctgagggggcagag
aaagacggcaagaacaatgtggccttcatgacctacttcctgcaggggaatctggatcag
tgtttggagcttctgatcagaacaaaccgactgcccgaagctgccttcctggctcgcacc
tacctgcccagtcaggtgtcccgtgtggtcaaattatggagggagaacctggcgaagatc
aacacgaaggcggccgagtctctagctgaccccacagagtatgagaatctgttccccggg
ctgaaagaagcctttgcagctgagcattacctccgagaatcctgcattggcacctctagg
cctgccaaggattatcctcttgtcacgctcaacgaagataggaatattcttgaggaggct
cagggatacgagcccaaaggaaccttcattcctgctgtctccaagacaaaggacagtgag
gagtcggtggcagcagctccagtcgctgcaggagaaccagctgtgacatcttcacggcct
gaacctgctgctcctacagcggtggacaaagaagaagaagaagaagaggaggaggaagag
gaggaaagccctgagttctcacagtcacaaaaagagactctggatgagctggaagtggac
ctggacaacatggagctggatgacatcgacaccacagacgttaacctcgatgatgacttt
ctagatgactaa

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