KEGG   Anoplopoma fimbria (sablefish): 129113229
Entry
129113229         CDS       T09102                                 
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04140  Autophagy - animal
afb04142  Lysosome biogenesis
afb04148  Efferocytosis
afb05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:afb00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    129113229 (vps11)
   04140 Autophagy - animal
    129113229 (vps11)
   04148 Efferocytosis
    129113229 (vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    129113229 (vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:afb04131]
    129113229 (vps11)
Membrane trafficking [BR:afb04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    129113229 (vps11)
   Hops complex
    129113229 (vps11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C Clathrin VPS18_solenoid_2nd TPR_Vps41 Beta-prop_WDR3_1st zf-C3HC4_2 Beta-prop_WDR36-Utp21_1st zf-rbx1 zf-C3H2C3 zf-RING_2 Beta-prop_IFT122_1st zf-C3HC4 TSGP1 zf-RING_5 TPR_GEMI5 WD40_Prp19 zf-ANAPC11 Beta-prop_EML_2 ADIP Rab11-FIP3 CC_Bre1 zf_RING_Vps8_fungal Beta-prop_VPS8 zf-RING-like Kbp-5
Other DBs
NCBI-GeneID: 129113229
NCBI-ProteinID: XP_054481417
LinkDB
Position
24:20212485..20222224
AA seq 924 aa
MAAFLQWRKFVFFDRDTVKDPVDNGKNFFLPKGISACDSGRGHIVLGDMDGKIWLLTRSL
QLTSFQAYKLRVTHLYQLKQHSILVSVGQDEQGINPLVKVWNLEKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTSPVTGLAFR
QVAKVTHLFVATLEKVHCYTLSIKEYPKVELDTHGCALYCSSLTDPSQDSQFIVAGEECV
YLYQPDERGPCFAFDGQKLLAHWHRGYLFLLIRDAKSPNKTEFGSSSPSDKQLLTIYDLD
NKFIAYSASFDDVVDVVAEWGSFYILTRDGRMFALQEKDTQTKLEMLFKKNLFVMAINLA
KSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHNLT
AYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQAGY
HSHAVFLAEKHMHHEWYLKIQLEDLKNYQEGLRYIGRLPFEQAESNMKRYGKTLMHHVPE
GTTLLLKGLCTNYQPSGDSAERDSLDKGRANKANSEEFIPIFANNPRELKAFLEHMMEVD
SRCPQGVYDTLLELRLQDWAHEQDPARQKVLQGEAVSLLRSDSTVFDKALVLCQMHNFKE
GVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACQRYGDQEGCLWEQALGYFARKEEDCKAY
ISEVLHHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKIHQYR
EETAHLRSEIQELKTSAKIFQKTKCNMCNSPLELPSVHFLCSHSFHQHCFESYAESEAEC
PTCTPENRKVMDMLRAQDQKRDLHDHFNRQLRSSNDGFSVVADYFGRGVFNKLTLVTDPP
GSKTVGSLEVNLQRDLLIHTKRTC
NT seq 2775 nt   +upstreamnt  +downstreamnt
atggcagcgttcttacagtggagaaaattcgtcttctttgacagagatacggtgaaggac
cctgtggataatgggaaaaacttttttcttcctaaaggaatatcggcttgtgactccggc
cggggtcacattgttctgggagatatggatggcaagatctggcttttgacccgctccctg
cagttgacctcttttcaggcctacaagttgagggtcactcatctctaccagctgaagcag
cacagcatcctcgtgtccgtggggcaggatgaacaaggaataaaccctctggtaaaggtc
tggaaccttgaaaagagagacagtggaaatcctctgtgcactaggattttccccgcaatt
cccggcaacaaaccgacagaagtgtcttgcctcagtgtacatgaaaacctcaacttcatg
gctattggcttcacagatggcagcgtggttttaactaaaggggacatcaccagagatcgt
cacagcaaaactctgactctgcacgagggaaccagcccagtcacaggcctcgctttccgc
caggtggcaaaggtcacgcatctgtttgtcgccactctggaaaaagtccattgctacacc
ctgtccatcaaggagtaccctaaagtagagctggatacacacggctgtgcgctgtactgc
tcctccctgacagatccctcccaggactcccagttcattgtggccggcgaggaatgcgtg
tacctgtaccagcccgatgaacgagggccctgcttcgcctttgatggacaaaagctgctg
gcccactggcaccgcggatatctatttttactcatcagggatgccaagtcgcccaacaag
acagagttcggtagcagctctccatcagacaaacagcttctgaccatctatgacctggac
aacaagttcatcgcctacagtgcctccttcgatgacgttgtagatgtggtggcagagtgg
ggctccttctacatcctcaccagagatgggaggatgtttgctcttcaggagaaagataca
cagaccaaactggagatgctgtttaagaagaacctgtttgtgatggccataaacctggct
aagagccagcacctggacagtgatgggctgtcagagatcttcagacagtatggcgatcac
ctttaccttaagggagaccatgacggggccatccagcagtacatccgcaccattgggaaa
ctggagccatcgtacgtcatcaggaaattcttggacgcgcagaggatccacaacctgaca
gcatatctgcaagccctgcacagacagtcactggccaacgcagaccacaccacactgctg
ctgaactgttacaccaagcttaaggacagctccaagctggaggagttcattaagagcagt
gaaagtgaggtccacttcgatgtcgagatcgccatcaaggttcttcggcaggccggctac
cacagccacgctgtcttcttggctgagaaacacatgcaccatgagtggtacctgaagatc
cagctggaagacctcaagaactatcaggaagggctgcgttacattggacgtctgcctttc
gaacaagcggagagcaacatgaagcgttacggcaaaacactgatgcaccatgttcctgaa
ggtaccacgctgctcctgaagggtttatgcaccaactaccaacccagcggagactctgct
gaaagagacagcctggataagggacgggccaacaaggccaactccgaggaattcattcca
atttttgccaacaaccctcgggagctgaaagccttcctggagcacatgatggaggtggac
tcccgttgtccccagggagtgtatgacacactgctggagctccggctacaagactgggca
cacgaacaggaccctgcaagacaaaaggtcctgcagggggaagctgtgtccctgttgagg
agcgacagcactgtgtttgataaggccctggtcctctgccagatgcacaacttcaaagaa
ggcgtcctctacctttatgagaagggtaaactgtaccagcagattatgcactaccacatg
cagaatgaggagtatgggaaagtggtagaggcctgccagcgctatggggatcaagagggt
tgcctatgggagcaggcgttgggatactttgccaggaaagaagaggactgcaaggcctac
atcagtgaggtcctccatcacattgaccaaaacaacctgatgcctccattacttgtggtg
caaacactggcacacaactcgacagccactctctccgtcatcaaggactacctcatcaac
aagctgcagagggagagccagcagatagaggacgatgaacgcaaaatccaccagtaccgc
gaagaaaccgctcacctccgctctgagatccaggagctcaaaacgagtgctaagatattc
cagaagaccaagtgtaacatgtgcaacagccctttggagctgccgtctgttcatttcctg
tgcagccactccttccaccaacactgcttcgaaagctatgccgagagtgaggccgaatgc
ccaacttgcactcccgagaaccgcaaagtcatggacatgctgcgtgcccaggaccagaag
cgcgacctgcacgaccacttcaacagacagttacgcagctctaatgatggtttctctgtc
gttgctgactactttggtcgaggagtgttcaacaaactgactctggtcaccgacccccct
ggcagcaaaaccgtagggagcctggaagtgaacctgcagagggaccttctcatccacacc
aagagaacctgctga

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