Anoplopoma fimbria (sablefish): 129113230
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Entry
129113230 CDS
T09102
Symbol
med13a
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13a isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129113230 (med13a)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
129113230 (med13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Motif
Other DBs
NCBI-GeneID:
129113230
NCBI-ProteinID:
XP_054481418
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All DBs
Position
24:complement(23925890..23996524)
Genome browser
AA seq
2175 aa
AA seq
DB search
MSSCYVPNGASLEDCHSNLFCLADLTGIKWKRFVWQGPTSAPILFPVTEEDPILCSFSRC
LKADVLSVWRRSQRQGRRELWLFWWGDDPNFADLIHHELEAEDDGLWENGLSYECRTLLF
KAIHNLLERCLMNRSFVRIGKWFVKPYEKDEKPINKSEHLSCAFTFFLHGESNVCTSVEI
NQHQPVYHLTEEHLTLAQQASSPFQVILSPFGLNGTLTGQSFKMSDPPTQKLIEEWNQFY
PISPRAKSGVSEDKAEDMDWEDDSLASVEVLVGGVRMVYPACLVLVPQSDIPVVAPVGSS
HCTAVYSGGHQVPASQREPAMSLVTLTPPTSPEEAQTGMDSHSAQKWVKMPSSSDAFSVD
RTSHHGGKIPRRMSSQVVERVWQECNINRAQNKRKFSASTNGTCEEELAEKAGAWDFVEH
SQRSYCSCSRYKSVKQRSGSTPGQTPSAGQPPQTPTKHKAGGEKPEKGDKLQKRPQTPFH
HRSLTSDDASMEAEATAGQRLAMRGQDGGRFSSIRSTDVSGIQKAPQLHGGGVSAGQSEQ
ANSPQPPPLSPHPCERSEESGEGMKNPSTPNSQHFYQPPPEPCLVGGRGRRGTRRARGSK
SALPLPSPPLPPRSVDLLRAPEPTVYVGAAVNLEEDGSHAPWRLFNLPRRKEAELPTLLL
PGDKLRDEPSASQDNLVSITEVMSSSKWPLKVSEERLQMYRARRNQYLSAAITDGDHEPE
VDPYAFEEGDVKFTFSNKKDKAGGEREPGKKHKGEDGGAGPSDDAQRAAAHNRMASTSLI
HETDLVVSINDLDNLFNSDEDDLAPGHRRPVNGTDEKFGSKEPKPSTLDPVSCISSADLH
QMFPTPPSLEQHIMGYSPMNMCSKEYGSMEHNTGMTMLDGTSSLGGHFKIEVEESFCSPK
PSEIKDYSFVYKPELCQPFVGCSMFAPLKALPSQCLPPVKIPEECIYRPSWTMGREMLNP
VPVMTFLNKDSNIPSVGSTMDQEYSQSYTPQTHTPFMSNSAPPSNSGAGILPSPATPRFS
APTPRTPRTPRTPRGPSSVQGSLKYENSDLYSPASTPSTCRPLNSVEPATVPSIPEAHSL
YVTLILSESVMNLFKDCNFDSCCICVCNMNIKGADVGVYLSDPVGEAQEPCSCGFSAVVN
RRYGNGSGLFLEDELDIIGRGSDVSREAEKRFEALRLSSLERTGVGRGDRVPDELILLLQ
DQCTNPFSPISILEHDIVTRGPSGAPVPPCVRVEERDYHSDCYMALEHGRQFMDNMSGGK
VDEALVKSTCLHHWAKQNAVDVSALCSQDVLRVLMSLQPVLQDAIQKKRTVRSWGVQGPL
TWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDFVVLSPFGLPYWEKLLLDPFGSQRD
IGYLVVCPDNEALLSGAKSFFRDLTAVYESCRLGQHRPISKGYPDGIVLVGGNGAKNLVD
QPVSDWFLKAASSNSDAFTKLKLYAQVCRHNLAPYLASQPLDSSLLTQPSLPPSSSQSAS
TQLSSSTSSSVSQQGSVNAAGSSVPNNNINNSSSNSGSGNGSASCNSLVTTSGQPGSGIP
SAKPSSFPPFGSMGTQGQGGGPQSGQLGQQAGTQNTGTSGDNSSSQTQGTTEPPESTLER
EKIGVPTDGESHAITYPPAIVVYIVDPFSYEEADGGPGPVPAHSSVWTLGLLRCYLEMLQ
FLPPHIRNSISVQIVPCQYLLQPVRGEDRHIYAQHLKSLAFSVFAQCRRPLPTSTNVKSL
TGFGPGLAIDTALKSPERPECLRLYTPPFILAPVKDKQTELGETFGEASQKYNVLFVGYC
LSHDQRWILATCTDLYGELLETCIINIDLPNRARRKKGSVRRLGLQKLWDWCLGLVQMTS
VPWRVVIGRLGRIGHGELKDWSILLSRRNLQSLSRRLKEMCRMCGISASDTPSILSVCLV
AMEPQGSFIIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAFVQVASSN
YTNIDPNIDILNATTDGSDAIGIFDLLDQENELVDPDIINISPTTSPVHSPGSHYHHGGD
GSKGQSTDRMESHEEVPNLLQQPLALGYFVSTAKAGPLPDWFWSACPQAENQCPLFLKAS
LHLHVSSVQSDELLHSKHSHPLDSNQTSDVLRYVLEQYNALSWLTCDPATQDRRSCLPIH
FVVLNQMYNFIMNML
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttatgtaccaaacggggccagcttggaggattgccattccaatctattc
tgtctggcggacttaacagggatcaaatggaagaggtttgtgtggcagggacccacctcc
gcacccatcctcttcccagtgacggaggaagaccccatcctatgcagcttcagccgctgc
ctgaaggccgacgtgctaagcgtatggcggcgcagtcagcggcaggggcggagggagctt
tggctcttctggtggggggacgaccccaacttcgccgacctcatccaccacgagctcgaa
gccgaggatgatgggctgtgggagaacgggctttcctacgagtgtcgcacgttgctgttc
aaagccatccacaacctgctggagcgctgcctcatgaatcgcagcttcgttcgcatcggc
aagtggttcgtcaagccctatgagaaggatgagaaacccatcaacaagagcgagcaccta
tcctgcgccttcaccttcttcttgcacggtgagagcaacgtgtgcaccagcgtggagatc
aaccagcaccagcccgtgtaccacctgacggaggagcacctcactctggctcagcaagcg
tccagtcccttccaagtgatcctgagtcctttcggcctgaacggaacactgacaggccag
tcgttcaagatgtcagatccgcccacccagaagctgattgaggagtggaaccagttctac
cccatcagtcccagggccaagagcggtgtgtcggaggacaaagctgaagacatggactgg
gaggatgactctctggcctctgtggaggtcctcgtaggtggtgtgcggatggtgtaccca
gcctgccttgtgctggtgccccagtcagacatccccgttgtggcccctgtggggtcctcc
cactgcactgccgtctactcgggtggccaccaagtgcctgcttcccagcgagagcccgcc
atgtctttggtgaccctcacccctcccacatcgcctgaggaggcacagacaggtatggac
tctcactcggcccagaagtgggttaagatgccttcatcgtctgatgcgttcagcgtggac
agaacaagtcaccacggaggcaagattccaagacggatgtccagtcaggtggtggagcgt
gtctggcaagagtgcaatatcaaccgagcccagaacaagcgaaagttctcagcctcaacc
aacggtacctgtgaggaagagttggctgagaaagccggagcctgggattttgtagagcat
tcacagaggtcatactgcagctgttccagatacaaatcagtgaagcagcgatcaggcagc
accccaggccagactccgtcagcgggccagcccccccagactcctaccaagcacaaagct
gggggagagaagccagagaaaggtgacaagctgcagaaaagaccccagacacccttccat
catcgcagcctgaccagcgacgacgcttcaatggaggccgaggcgacagctggccaaagg
ttagccatgaggggccaggacggaggaagattctctagtatacgatccacggatgtgtcc
ggcatccaaaaagccccccagctccatggtgggggggtcagcgctggacaatcagaacag
gccaactccccccaacccccaccacttagcccccacccctgcgagcgcagtgaggagtca
ggggagggcatgaagaacccttcaaccccgaacagccaacacttttaccagccgcccccg
gagccctgcctggtcgggggaagggggcggcgaggaacccggagggccagagggtctaaa
tcagcacttccactcccatcacccccactcccaccccggagcgtcgacttactccgagcc
cccgagcccaccgtgtatgtgggcgcggcggttaacttggaggaggacggctcccacgca
ccatggcggctattcaatttaccccgcaggaaagaagccgagctgcccacgctactgctg
ccaggggacaagctgagggacgagccctcagcatcacaggacaacctggtgtcgatcaca
gaggtgatgtcctcatctaaatggccacttaaggtgtctgaagaacgtcttcagatgtat
cgagccaggaggaaccagtacctatcggctgccataacggacggagatcacgagccggag
gtggacccctacgccttcgaggaaggagatgtcaagttcacattctccaacaagaaggat
aaggcaggcggggagcgggagcctggcaagaaacataagggtgaagatggaggagctgga
ccgtcagatgatgctcagcgggcggccgctcacaaccgcatggcttccaccagcctgatc
cacgagacagacctggtggtgtccatcaacgacctggacaacctcttcaattcggacgag
gatgatctggcgcccggtcacaggcgaccagtgaatggaacggatgagaaatttggcagc
aaggaaccgaagccatccactttggaccctgtatcctgcattagctcggcagacctgcac
caaatgtttcccactcctccctccctagagcagcacatcatgggctactcgcccatgaac
atgtgcagcaaggagtacggcagcatggagcataacacgggcatgaccatgctggacggc
acctcatctctgggaggccacttcaagattgaggtggaggagagcttctgcagtccaaag
ccatctgagatcaaggactactcatttgtgtacaagccagagctgtgtcagccgtttgta
ggctgctccatgtttgcccctctgaaggcattacccagccagtgtctcccgccggtcaaa
ataccagaggaatgcatctaccgcccaagctggaccatgggcagggagatgctcaacccc
gtgcctgtcatgaccttcctcaacaaggatagtaacatccccagtgtgggcagcaccatg
gaccaggagtacagccagagctacaccccacagacccacacacctttcatgtccaacagt
gctcccccaagtaacagtggcgctggcatactgccttcacctgctaccccacgtttctct
gcccccaccccacgaacgccacgcaccccacgcacgcctcggggcccctccagcgtccag
ggctcgctcaaatacgagaactcggatctgtactcgccggcgtccaccccctccacctgc
cgaccgctgaactccgtagagccggccaccgtaccctccatccccgaggcccacagcctc
tacgtcaccctcattctctccgagtcggtcatgaacctcttcaaggactgcaacttcgac
agctgctgcatctgcgtctgtaacatgaacataaaaggagctgacgtgggcgtgtacctg
agcgaccccgtcggcgaggctcaggaaccctgcagctgcggcttcagcgccgtggtcaat
cggcgttacggcaacggctcgggcctcttcctggaggacgagctggatatcatcggccgt
ggctcggatgtcagcagagaggcagagaagcgctttgaggcactgcggctctcctcgctg
gaaagaactggagttgggaggggggaccgtgtcccagacgagcttattctcctcctacag
gaccagtgtaccaaccccttttcacccatttcaatcctagagcatgacatagtgacacgg
gggccaagtggggcccctgtgccgccatgtgtgagggtggaggagagggactaccacagc
gactgttacatggcactggagcacggcaggcagttcatggacaacatgtcaggcggcaag
gtggacgaggcgctggtcaagagcacctgcctgcaccactgggccaaacaaaacgcggtg
gatgtgagtgcgctgtgctctcaggatgtgctgcgggtgctgatgtccctccagcccgta
ctccaggacgcaatccagaagaagaggacagtaaggtcgtggggcgttcagggtcccctc
acctggcagcagttccacaagatggctggacggggctcttacggcacagacgagtcccca
gagcccctgcccattcccaccttcctggtgggttatgagtatgactttgtggtgctgtct
ccgtttggtctcccctactgggaaaaactgttgctggatcccttcggctcccagcgggac
attgggtacctggtggtttgtcctgacaacgaggcattgctcagcggcgccaagagcttc
ttccgagacctcactgctgtctacgagtcatgtcgactgggccagcaccgacccatttcc
aaaggctaccccgatggcattgtcctggtcggcggcaatggggccaagaacctggtggat
cagccagtcagcgactggttcctcaaggctgccagcagcaacagcgacgccttcactaag
ctcaaactctatgcacaagtgtgccgccacaaccttgctccatacctcgcatcacagcca
ttggacagctccctcctcacacagcccagtctccctccctcgtccagccagtcagcatcc
acacaactgtccagctccacttccagctcagtcagccagcagggctcagtgaacgctgcg
ggctcctccgttcccaacaacaacatcaacaacagcagcagcaacagtgggtcgggaaat
ggctccgcgtcgtgcaacagtctggtgaccacctcgggccagcccggcagcgggataccg
tctgccaaacccagctcttttccccccttcgggagcatgggcacccaggggcagggaggt
ggcccccagagtggacagctggggcagcaggctggtacccagaatactggcacctcaggg
gacaactccagcagccagacccagggaaccacagagcctccagaaagcactttggaacga
gagaagataggcgtgcccacagacggggagtcccacgccatcacgtatccacccgccata
gttgtttacattgtggaccccttcagctacgaggaggccgacggtggtccggggccagtg
ccggcccactccagtgtgtggacgcttggtttgctacgctgctaccttgagatgctgcag
ttcctgcccccacacatccgcaactctatttctgtacagattgtcccttgccagtacctg
cttcagccagtacgaggtgaagaccgtcacatctacgctcagcacctcaagtctcttgcc
ttctccgtcttcgctcagtgcagacggccgctgcccacctccaccaatgtcaagtcattg
acgggcttcgggccgggcctggccattgacaccgcactgaagagcccagagaggccggaa
tgtctgcgtctgtacacacctccattcattctagcaccggtaaaggacaagcagacggag
ctcggggagacatttggggaagcatcgcaaaaatacaacgtgctgtttgtcggatactgt
ctttcccacgaccaacggtggatcctggctacatgcactgacctgtatggggaacttcta
gagacctgcatcatcaacatcgatttgcccaacagggcacggaggaaaaagggctctgtt
cggcggctcggactgcagaagctgtgggattggtgcttggggctggtgcagatgacatca
gtgccatggagggtggtgattggccgactgggcaggataggacacggagagttaaaagac
tggagtattctgctgagcaggagaaacctccagtcactgagtcgtcgtctaaaggaaatg
tgtcgaatgtgtggcatctctgcctcagatactcccagcatcctcagtgtgtgcttggtt
gccatggagccccagggatcatttatcatcatgccagactctgtgtcgacaggctcagtg
tttggccgcagcaccaccttgaacatgcagacgtcccagctgagcaccccacaggacacc
tcctgcacccacatcctggtcttccccacgtcagccttcgtccaagtggccagctccaat
tacaccaacatcgacccaaacatcgacattctaaatgctaccaccgatgggtccgatgct
atcgggatctttgacctgctggaccaggagaacgagttggtggacccagacatcatcaac
atctcgcccaccacttcaccagtacactcccctggctctcattaccaccacggaggggat
ggcagtaagggccagagtactgaccgtatggagtctcatgaagaggtccctaacctcctg
cagcagcctctggcacttggctactttgtatccacggcgaaagccggcccactacctgac
tggttctggtcagcctgtccgcaggctgaaaaccagtgtccactcttcctcaaggcctct
ttgcacctccatgtgtcttcagtgcaatcagatgaactactgcacagcaaacattcccat
cccctcgactccaatcagacctcagatgtactcagatatgtgctggagcagtacaacgcc
ctctcctggctgacgtgtgacccagctacacaggaccgacgatcatgtctacccattcac
tttgtggtgctcaaccagatgtacaacttcatcatgaacatgttgtag
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