Anoplopoma fimbria (sablefish): 129113309
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Entry
129113309 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129113309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129113309
03036 Chromosome and associated proteins [BR:
afb03036
]
129113309
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129113309
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
129113309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
129113309
NCBI-ProteinID:
XP_054481504
LinkDB
All DBs
Position
24:complement(1026492..1049688)
Genome browser
AA seq
1826 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTASTFGQQNTGFGATGGFGTSAFGAAAPTGGLFGPTQNKPGG
LFGSSTFSQPPASSTNTGFGFGATTGTTTSLFGSTGTGTTGGLFSQQSNAFGANKPTSFG
SFGTSTSSGGLFGSTNTASNPFGGGGGVASLFGGAGFTAAQQQPGTTVKFNPPTGSDTMV
KAGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMAAPTGGLFGATVATS
SAATGLFGAAAPNTNFSFGQNKSTFGAAPAASGFGAAAGAGLFGQQAPQQASSLFKPFGQ
TTTAPSTGFSFGNTNTMGQANTSSMGLFGNAAAPQAGGLFGAAQPSTAAGFGTATGLFGQ
ANAGFGNVGTQSLFGNKTAGFGTTTTSAPSFGTGTGLFGNKPALTLGTGTNTSTFGFGAN
PAAGSLFGNKPATGGLGTALGTSFGAAVGAGQTSLFGNNQSKLGATLGTMGTFGATAFNT
GASTLGFGAPQQPVALTDPSGTASQQAMLQQQLSVLAYSPYGDSPLFRNPLSDPKKKEER
LKPTNPTAQKALTTPTHYKLTPRPATRVRPKALSSSGASKSQLFDGLDDDEPSLTNGAFV
PRKSIKKLVLKNLNSSQYNSPISKETDDLASPPEYPQNGHSLMEEEEEMPGASSPVDDDP
EVTQFYVNPIAKPIPQGRVQTSLQDTISDLNMHKVARNGGLELSSEDVSASLGDESLQED
REEEQQEMQQSPHPAGIVLNRVGYYTIPSMDDLAEMVDENGECVVENFTVGRKGYGSIFF
PGEVNVTALNLDEIVHFRRKEVIVYPDDKNKPPEGEGLNRRAEVTLDGVWPNDKTACTQI
RSPERLTEMNYEGRLEKASRKQGARFLEYRAETGSWVFEVAHFSKYGLQDSDEEEDVPLK
TDPKKLKTMMMSLPATRPQQLPPSQQQVAPQAQSTVAVEIPGGMAELDSDMADITQSFPT
ESMLGGEMDDDSDLPTGEKLGGLIPAEHDGVSASGHMASSLGINPHTLQIMKASLFAEDE
EESDMFQDHRATKVSADVSSPRLVVPGTQSRPSVGGLLQARFTSGLFSQMSDSPQPPRSS
HWAGSGPSSFLLPARTPEPSVRTVGVRRLGGPVTLKESVTQGKGSLLMDAGLFKGRSFRV
GWGPGWTLAHCGDRLSSPPAKRLDRHELTKTDFSFLPKPARSKPLVESPYKVVLEQLVVL
EPPGKTSEEEDEEEESQSVLQRPLEICLKHSTVDTSDASACPLVRPRHGVAALHEYAEWI
SELSDKHGDADPLLGYWAEVWTLCEALWGRLGPADLESDAEMPDAETPDEYEQQLERRRT
FSAWLSRGAACRVEEEVALAAKGRHTDAIFSYLTGNRISEACRLAQKEGDHRLSLLLSQA
TGSQYCRDLLALQLADWNRMQTDSYLPEERLRIYTLLAGKPVWQSSESVVNVCSELDWKR
CVAVHLWFMLPPTASVADALARYEAAFQGSCEGGKYACAPLPPYMEAEHPDMEEEEESKR
SLHDLCFHLLKLYSDRHYSLQQLLDPLTLTWDRLDYRLSWHLWGVLQALHYSHLSASRQG
LLHASYAAQLESAGLWHMAVFILLHIPNDTYSAGASGEEMLTLHCRLQETDESQRRERFL
TERLLIPEQWIHEAKATRARRDADHQQEALHLYRAGFWSQCHRLLIQHLASDCIINDNHD
YLLEFLEGLAVPEHSATIQDWDTAGRVYLDYIRVIKTLQDIQQMENAGYELERLYGDVTS
LCSRIELLPCSSARDRLAQSEMAKRVANILRVVLSLQQGDAASDSSXVPLSQLAPHISRL
PMPEDYTLEELRGLTQSYLRQLTVSQ
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcattcggcactcccttcggaggagggacgggggggtttggcaccgcg
tcgacctttggacaacagaacacgggttttggggcgacgggaggcttcgggacgtctgcg
ttcggggccgcggcccccaccggaggactgtttggtcccacacagaataaacctggcggt
ctttttgggtccagtactttcagccagccgccggcttcctccaccaacaccggctttggc
ttcggggcaacgaccggcactacgaccagcttgtttggcagcaccgggactggaaccacc
ggcggactcttctcccagcagagcaatgctttcggagccaacaaacccacctcgtttgga
agctttgggacgagcaccagcagtggcgggctgtttgggtcgaccaacaccgcctccaac
ccgttcggtggaggtggaggtgtcgcctccctgtttggaggtgcggggttcaccgccgca
cagcagcagccgggaacgactgtaaaattcaatcctccaacaggaagtgacaccatggtg
aaggccggtgtgaccaccagcatcaacaccaagcaccagtgcatcaccgccatgaaggag
tacgagaacaaatccctagaggagttgaggttcgaggactaccaggcgggcaggaagggt
ccgaccaacccgatggccgcaccgacaggcggcttgttcggcgccaccgtggcaacgtcc
agcgccgccaccggcctgttcggtgccgcggcccccaacaccaacttctccttcggacag
aacaagagcaccttcggagcagcaccggctgccagcgggttcggtgcggcggccggcgcc
ggtctctttggtcagcaggccccccaacaagccagcagcctcttcaagccgttcggtcag
accaccaccgcgccgagcaccggcttctccttcggcaacaccaacaccatgggacaggcc
aacaccagcagcatgggtttgttcgggaacgcggcggcgccgcaggccggcggcttgttc
ggcgcggctcagcccagcaccgccgccggcttcgggaccgccaccggactgttcggacaa
gccaacgccggatttggaaatgtcggcacacagagtttgttcggtaataagacggccggg
ttcggcaccaccaccaccagcgccccgtccttcggcaccggcaccgggctgttcggcaac
aagccggccctcacgctggggaccggaaccaacacctccaccttcggttttggggctaac
cctgctgccgggagtctgtttgggaacaagccggccaccggaggactggggacggcactg
gggaccagcttcggagcagcagtgggcgcaggacagacgtctctgtttgggaacaaccaa
agcaaactgggcgccacactgggaacgatgggaacctttggagcgacggcattcaacacc
ggagccagcaccctgggctttggagctccacagcagccagtcgcgctcacagatccgagt
gggacggcctcccagcaggccatgctccagcagcagctcagcgtcctggcgtactcgccg
tacggagactcgccgctgttcagaaacccgctgtcagaccccaagaagaaggaggagcgt
ctgaaaccaaccaatccgacggcccagaaggctctgaccacgcccacccactacaagctg
acccctcgcccggcgaccagggtccgccccaaagcgctgtcgtcatcgggggcctccaag
tcgcagctcttcgacggcctcgacgacgacgagccctcgctcaccaacggagccttcgta
cccaggaagagcataaagaaactcgtgctgaagaacctgaacagcagccagtacaacagt
ccaatcagcaaagagacggacgacctcgcttcacctccagagtatcctcagaacggacac
agcctcatggaggaggaggaggagatgccgggtgccagcagcccggtggacgacgacccc
gaggtcacccagttctacgtcaaccccatcgccaagccgatccctcagggccgtgtccag
accagcctgcaggacaccatcagcgacctcaacatgcacaaagtggcccggaacggcgga
ctggagctgagcagcgaggacgtgtctgcgtctctcggggacgagtctctgcaggaggac
agagaggaggagcagcaggagatgcagcagtctcctcacccggcaggcatcgttctgaac
cgtgttggttattacaccatcccctccatggacgatctggctgagatggtggacgaaaac
ggagagtgtgtggtggaaaacttcaccgttggcaggaaaggctacggctccatcttcttc
cccggcgaggtgaacgtgacggcgctgaacctcgacgagatcgtgcacttcagacgcaaa
gaggtcatcgtgtacccggacgacaagaacaagcctccagagggggaggggcttaacagg
cgagccgaggtgactctggacggcgtttggccaaacgacaagacggcctgcactcagatc
cggagccccgagcgtctgacggagatgaactacgagggtcggctggagaaggcctcccgc
aaacagggagcccgcttcctggagtaccgagctgagaccggatcctgggtgttcgaggtg
gcccatttctccaaatatggcctccaggactctgacgaggaggaggacgtgccgctcaaa
acggacccaaagaagctgaagacgatgatgatgtcacttcctgccacccggccgcagcag
ctccccccctcccagcagcaggtggcgccacaggctcagtctactgttgccgtggagatc
ccggggggcatggccgagctggacagcgacatggccgacatcacccagagcttcccaaca
gagagcatgctgggaggagagatggatgacgacagcgacctgccgacgggggagaagctc
ggaggtctgatccccgcagagcacgacggcgtctccgcgtccggccacatggcgtcctcg
ctggggatcaacccgcacaccctgcagatcatgaaggcgtctctgttcgctgaggatgag
gaggagagcgacatgtttcaggatcacagagccacgaaggtgtccgccgacgtctcgtct
cctcgcctcgtcgtgccgggaacccagagccgaccctccgtcggcggtctccttcaggct
cgtttcacctcgggcctcttctctcagatgtcggactctcctcaacccccccgctcgtca
cactgggccgggtcgggaccctcgtccttcctgctgcccgcccggaccccggagccttcg
gtcaggacggtcggcgtccggcggctgggcggcccggtgaccctcaaagagtccgtcact
caagggaaggggagtctgttgatggacgccgggctgtttaagggtcgatccttccgggtg
ggttggggtcccggctggacgctggcgcactgcggcgaccggctgagctcgccgccggcc
aaacggctcgaccgccatgaactcaccaaaacagacttcagcttcctgccaaaaccagcc
aggagcaaacctctggtagagagcccctataaggtggtgctggagcagctggttgttctg
gagcctccagggaagaccagcgaggaggaagacgaggaggaggagagccagtcggtgctg
cagcgccccctagagatctgtctgaagcacagcactgtggacaccagcgacgcctccgcc
tgcccgctggttcgaccccggcacggcgtggcggcgctgcacgagtacgccgagtggatc
agcgagctgagcgacaagcatggagacgcagaccctctcctgggttactgggccgaggtc
tggacgttgtgcgaggccctgtggggccggctgggccccgccgatctggagtccgacgcc
gagatgcccgatgccgagacgcccgacgagtatgagcagcagctggagaggaggcggacc
ttctcggcctggctgtcccgcggagccgcctgccgggtggaggaggaggtggcgctggcg
gcgaagggtcgccacacggacgccatcttcagctacctgacgggaaaccgcatcagtgag
gcgtgtcggctggcgcagaaggaaggagaccaccgtctgtccctgctgctgtctcaggcc
accggctctcagtactgtcgggacctgctggccctccagctcgccgactggaaccgcatg
cagaccgacagctacctgccggaggagaggctacgcatctacacactgctcgcagggaaa
ccggtgtggcagtcgtctgaatccgtggtgaacgtttgctccgagctggactggaagcgc
tgcgtagccgtccacctctggttcatgctgccgcccaccgcctccgtggccgacgccctc
gccagatacgaagccgccttccagggctcatgtgaggggggtaaatacgcctgcgccccc
ctccctccgtacatggaggcggagcatccggacatggaggaggaggaggagtctaaacga
tcgctgcacgacctctgcttccacctgctcaaactctacagtgacagacactacagcctg
cagcagctgctggaccctctgaccctcacctgggaccgtctggactaccggctcagctgg
cacctgtggggcgtcctgcaggcgctgcactacagccacctgagcgcctcgcggcaggga
ctcctccacgccagctacgccgcccagctggagagcgccggcctctggcacatggccgtc
ttcatcctgctgcacatccccaacgacacgtactcagcgggagcgagcggtgaggagatg
ttgaccctgcactgccgcctgcaggagactgacgagtctcagcggagggagcgcttcctg
acggagaggctgctgatcccagagcagtggatccacgaggccaaggccaccagagcacgc
cgcgacgccgaccaccagcaggaggcgctgcacctttaccgggccgggttctggagccag
tgtcaccggctgctcatccaacacctggcctcagactgcatcatcaacgacaaccacgac
tacctgctggagttcctggaggggctggcggtccctgaacacagcgccaccatccaggac
tgggacacggcggggagggtttacctggactacatccgcgtcatcaagactctgcaggac
atccagcagatggaaaacgccggttacgagttggagcgtctctacggcgacgtgacgtct
ctgtgcagcagaatcgagctgctgccctgcagctccgccagagaccgcctcgcccaatca
gagatggcgaagcgcgtggccaacatcctgcgggtggtgctgagcctgcagcagggcgac
gccgcctccgactcctcgngcgtgccgctcagccagctggcgccgcacatcagccgcctg
ccgatgccggaggactacacgctggaggagctgcgaggcctcacgcagtcgtacctgcgg
caactcaccgtcagccaatga
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