Anoplopoma fimbria (sablefish): 129113382
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Entry
129113382 CDS
T09102
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03030
DNA replication
afb03420
Nucleotide excision repair
afb03430
Mismatch repair
afb03440
Homologous recombination
afb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129113382
03420 Nucleotide excision repair
129113382
03430 Mismatch repair
129113382
03440 Homologous recombination
129113382
03460 Fanconi anemia pathway
129113382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129113382
03032 DNA replication proteins [BR:
afb03032
]
129113382
03400 DNA repair and recombination proteins [BR:
afb03400
]
129113382
Transcription factors [BR:
afb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
129113382
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
129113382
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
129113382
MMR (mismatch excision repair)
129113382
DSBR (double strand breaks repair)
HR (homologous recombination)
129113382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
zf-like
IBR
Motif
Other DBs
NCBI-GeneID:
129113382
NCBI-ProteinID:
XP_054481609
LinkDB
All DBs
Position
24:14200031..14237432
Genome browser
AA seq
661 aa
AA seq
DB search
MKSESLLAWRTILACDMSVQLTKGAVEALFNGSEVDDHLVLQLLNIRQVNPSSGLPRFRL
MMSDGQHSLSSLLLATQLNNLQEENLLVPNCVCMVKKTINNTLSDGRHVVIVLDMEILQS
AEETGGKIGNPTPFNSTGKTSSPQKSDSRSSVPASPPSAAVPGPSYKNNSSTLSPPRGHG
KGFVGKSPMKGSPMKGSPMKGSPMKGSPMNASPMKGSPMKGSPASPSSLAKVIPIANLNP
YISKWTIRARVTNKSSIRTWSNSRRDGKVFSFDTVDESGEIKITAFNNEVDKFFSLVEQG
KVYFITKATLKVANKQYTTLKNDYEITLHAQSSIVPCDDGQDIPALHCDFVPIAELENRD
KDAIIDVIGVCKSAEDVSRITTKTSREVSKRALNLIDTTGKVVMVTLWGEEAEKFDGSRQ
PVVAIKGARLSDFGGRSLSALFSSTVMVNPDLPEAFSLRAWYDQGGYATDSQSLTETRSV
GSGAKMNWKTLSDVKNEQLGQGEKADYFSCVATVLYIRKENCLYQACPSADCNKKVIDQQ
NGLYRCEKCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEVLLGHSAETLGQLRDTD
EAAFDEVFQKTNFTTRIFRNRVKLETYNDESRVKVTVIEAQPIDHREYSRRLLSNIRKLA
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcgaaagtctgcttgcttggagaaccattttagcgtgtgacatgagtgtacaa
ctcacaaagggagcagttgaagcactgttcaatggctcagaggtggacgatcatctcgtg
ctgcagctgctgaacatccgtcaggtcaaccctagttctggcctacccaggttccggctc
atgatgagtgatggtcagcactctttgtcttccttactgttggccacacaattaaacaat
ctgcaagaagagaacctcctggtacccaactgtgtgtgtatggtgaagaagaccatcaac
aacacattatctgatggcaggcatgtggtgattgtgctggacatggagattttgcaatcg
gccgaggaaactggagggaagattggaaatcccactccatttaattcaactggtaagacg
tcatctccacagaagtctgactcacgttcttctgtcccggcttcccctccatctgctgca
gtacctggaccctcctataagaacaacagcagcactctttctcctccccgaggccatgga
aaaggttttgtgggaaagtcacccatgaagggttcacccatgaagggttcacccatgaag
ggttcacccatgaagggttcacccatgaatgcgtcacccatgaagggttcacccatgaag
ggttcacccgcttctccaagttccttagcaaaagtgattcctattgcaaacctcaacccc
tacataagcaagtggactatcagagctcgagtcactaacaaatccagtatccgcacctgg
agtaactctagaagagatggcaaggtcttctcctttgacacggtggatgagagtggggaa
atcaagatcacagccttcaacaacgaagtggataagtttttctctctagtggagcaaggc
aaggtgtacttcatcaccaaggctacactgaaggtggccaacaaacagtacacgacacta
aagaacgactacgagattacccttcatgctcagtcatccatcgtgccatgcgatgacggc
caagacatccccgctctgcactgtgactttgtgcccatcgctgagctggagaacagggac
aaggacgccatcattgatgtgattggagtgtgtaagagtgcggaggatgtatcccgtatc
accaccaagaccagcagagaggtctccaagagggccctcaacctaatagacacaactggc
aaagttgttatggtcacactgtggggagaggaggccgagaagtttgacggctctcggcag
ccagtggtcgccatcaaaggagcgcgcttgtccgatttcggaggcagatctctctctgct
ttgttcagttcaacagtcatggtcaacccagacttaccagaggcgtttagtctgcgggcc
tggtatgaccagggaggctatgcgacggacagccaatccctgacagagacgaggtcagtg
ggcagcggagcaaagatgaactggaaaacactgagcgacgtcaagaatgaacagttggga
caaggagagaaggcggactatttcagctgtgtggcgacagtgctgtacatccgtaaggag
aattgtctgtaccaggcctgcccgtctgcagactgcaacaagaaggtcatcgaccaacag
aacggactgtaccgctgcgaaaagtgtaacagagagttccccaacttcaaatacagactc
ctactttctgccaacttagcagactttggggataaccagtgggtgacatgcttccaggag
acagctgaggtcctgttaggtcacagtgcagaaacactgggacagctcagagacacagac
gaagctgcattcgatgaagtctttcagaaaaccaacttcacaactcgcatcttcagaaac
agagtcaagctggaaacgtacaatgatgagagtcgagtgaaggtaaccgtcattgaagcc
cagccaatcgaccacagggaatacagcaggagactcctcagcaacatccgcaaattggcc
agctga
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