Anoplopoma fimbria (sablefish): 129113480
Help
Entry
129113480 CDS
T09102
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1 isoform X1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
129113480 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
afb04040
]
129113480 (trpv1)
Ion channels [BR:
afb04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
129113480 (trpv1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_5
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
129113480
NCBI-ProteinID:
XP_054481775
LinkDB
All DBs
Position
24:complement(25082779..25094213)
Genome browser
AA seq
816 aa
AA seq
DB search
MRIYESITIVLGKTSYLKDSPLLFCFDQIFNQEDNLEQEELLLTDNRTEEEKARQKAAKK
GGVVSALGLGQESPTAPMDTDYQEEMEETKPQVRFNPNFDKGIRGEVQQKGDSQRFTIDG
LFEAVACGDVRKLDNLHQYLHLNMMRLSDSLYQSYGKTVLMKALLHLKDGKNETVELLID
ISEKIGDIKEFVNAAYTNSYYKGQTALHIAIERRNISYVKLLVSKGANVHANACGVFFQP
HDGPNFYFGELPLSLAACTNQPAVVDFLMENEYQRADAKMMDSHGNTVLHALVMVADNSM
DRDKDNDNTEFITNMYDRILKTTAQLHPELKLEDIENKKGLTPLKMAAKTGKIGLFTHIL
KREFQESHTKHLSRKFTEWVYGPVHSSLYDLASVDSYEDNSVMEILVYGSDIPNRHEMLQ
MEPLSRLLEEKWKKFAGRMFFLNFLVYLMYLIIFTVVAYNKKFGELPYPSKHTTMGYLYI
SGQLLTALANCYFFLAGILDMKRKRPKLQTLLIDGYYEILFFVQGLLFMVTAVLYLFGQK
QYLSFLVLCLALSWMNMLYFSRGDIHMGIYSIMIQKMILSDILRFLLVYIVFLFGFSAAV
VTLLREPNVKNSTVSQQGKVRVFGPLDAGEECVKPSFTSISYTTLQLFKFTIGMGDMEFT
QDHENAEVFYLLLIGYIILTYILLLNMLIALMNRTVEKTTEESNSIWKLQRAITILEMEK
RLSCCLRRRFRCGVEKILRTDLGDERRRCFRVEEVNWNKWNINLGKINEDPGCSDRGQHP
ASDYPPNRAKRGRSWRSWRTPTTQSTEMLSLNPTAV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatctatgaaagcatcacaatagtacttggaaagacctcatatctgaaggactct
ccactgttgttttgttttgatcagatttttaatcaagaagacaatctggagcaggaagag
ttacttctgacagacaaccggaccgaggaggagaaggcgcggcagaaagccgcgaagaaa
ggcggtgtagtttctgccctgggtttgggccaggagtcgcccacggcccccatggacact
gattaccaggaggaaatggaggagaccaagcctcaagtcagattcaatcccaactttgac
aaagggattcgaggcgaagtgcagcaaaaaggagacagccagaggtttaccatcgacggg
ctgtttgaagccgtggcctgcggggacgtcaggaagctcgacaacctgcatcagtacttg
cacctgaacatgatgaggctctccgactccctgtatcagtcctacggtaaaaccgtcctg
atgaaggctctgctgcacctcaaggacggcaagaacgagacggtggagctcttgatcgac
atttcagaaaagataggcgacattaaggagtttgtgaatgcagcctacaccaacagctac
tacaaaggccagacagctctccacattgccattgagaggagaaacatttcctacgtgaag
ctgctggtcagtaaaggagcaaatgtccatgccaatgcctgcggggtattcttccagcca
cacgatggccccaacttctactttggtgagctgcctctgtctctggcagcctgcaccaac
cagcccgccgtggtggacttcctcatggagaacgagtaccaacgagcggacgctaagatg
atggactctcatggcaacacggtgctgcacgccctggtgatggtggctgacaactctatg
gatagagataaggataatgataacacagagttcattaccaatatgtacgaccgcatcctc
aagaccactgcccaactgcaccccgagctgaagctggaggacatcgagaacaaaaaagga
ctaacgcctctcaaaatggccgccaagactggcaagatcgggctttttacacacatcctg
aaacgtgaattccaagagagtcacaccaaacatttgtcccgtaagttcaccgagtgggtt
tacgggcccgtccacagctccctgtacgacctggcctcggtggactcgtacgaggacaac
tcagtcatggagatactggtctacggaagtgacattccaaaccgccacgagatgctccag
atggagcctttgagccggctgctggaggagaagtggaagaagtttgcgggtcggatgttt
tttctcaacttcctggtctacctgatgtacctgatcattttcactgttgtagcctacaat
aagaaatttggagagctgccgtatcccagcaaacacaccacaatgggttacctgtatatc
tcaggccagctactgacagcgctggcaaactgctatttctttcttgcagggatcttagac
atgaagaggaaacggccgaagctgcagacgttgctgattgatggatattatgagattctt
ttttttgtgcagggcctcctcttcatggtcacggccgtcctgtatctgttcgggcagaag
cagtacctcagcttcctggtgctgtgtcttgctctcagctggatgaacatgctctacttc
tcacggggcgacatacacatgggcatctacagcatcatgatccagaagatgatcctcagt
gacatcctgcggtttcttctcgtctacatcgtcttcctctttggattttcagcagcggtg
gtcaccctgctcagagagcctaatgtgaaaaactccactgtaagccagcaggggaaggtg
cgtgtgtttggtccccttgacgctggagaggagtgtgtcaaaccctccttcacaagcatc
tcctacaccacgctgcagctcttcaagttcaccattggcatgggcgacatggagtttacc
caggaccacgagaacgccgaggtcttctacctgctcctcatcggctacatcattctcacc
tacatcctgctgctcaacatgctcatcgccctcatgaaccgcaccgtggagaagaccacc
gaggagagcaacagcatctggaagctacagagggccatcaccatcctggaaatggagaaa
aggctgtcttgctgtctgaggaggaggttccgctgtggggtggagaagatcctccgcact
gatcttggagacgaacgtcgccgatgtttcagagtggaggaagtcaactggaacaaatgg
aacatcaacctgggcaaaatcaatgaggatcccgggtgctctgatcgcggccaacacccc
gcctcagactacccgcccaacagagcaaagagagggaggagctggagaagctggcggacg
ccgacgactcagtccacagagatgctttctctgaaccccacagctgtataa
DBGET
integrated database retrieval system
