Anoplopoma fimbria (sablefish): 129113513
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Entry
129113513 CDS
T09102
Symbol
pds5b
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
129113513 (pds5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
afb03036
]
129113513 (pds5b)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129113513 (pds5b)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
129113513 (pds5b)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
129113513 (pds5b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
PI-TkoII_IV
HEAT_EF3_N
INTS7_N
EnP1_C
Motif
Other DBs
NCBI-GeneID:
129113513
NCBI-ProteinID:
XP_054481825
LinkDB
All DBs
Position
24:complement(13838774..13867444)
Genome browser
AA seq
1417 aa
AA seq
DB search
MAHSKARVTDGKVTYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLA
LHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDT
KSAQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFQVINNGHNQKVHMHMVDL
MSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQV
LMLGKTSVSDLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNDERLQVVKLLAKMF
GAKDSELAAQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAKDLTEFLRVRSH
DPEEAIRHDVIVSIVTAAKKDLSLVNDALLNFVKERTLDKRWRVRKEAMMGLASIYRKYS
LQGEGGREASKQISWIKDKLLHIYYQNSIDDRLLVERVFAQYMVPHNLETAERMKCLYYL
YATLDTNAVKALNEMWKCQNLLRHNVKDLLDLIKKPKSEASSKAVFAKVMVITKNLPDPG
KAQDFVKKLAQVLEDDERIRDQLETLVSPSCSCKQAEVCVRDITKKLGSPKQPSNPFLEM
VKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEEEGVPTEEAIRAGLELLKVLSFTH
PVSFHSAETFESLLGCLKMDDEKVAEAALQIFKNTGSKMEESFPHIKSVLLPVLQAKAKR
GPPRQAKYAIHCINAMFTNRDTHFAQIFEPLHKGLDPANLEQLITPLTTLGHLAQLAPEQ
FAAPLKSLVANFIVKDLLMNDRIPGKKTTKLWVPDEEVSPETLAKIQGIKLMVRWLLGVK
NNQSKSGNSTLRMLTAILHSDGDLTEQGRMGKPDMSRLRLAAACALLKLAQEPCYHEIIT
LEQYQLCALVINDECYQVRQCFSQKLHRGLCRLRLPLEYMAVFALCAKDPVKERRAHARQ
CLVKNVNIRREYLKQHAAISDKLFSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKEIKEA
LWFVLEIIMAKNENNSHAFIRKMVENIKQTKDAQAPTDPKTNEKLYTVCDVAMNIIMSKS
TTYSLESPKDPVLPTCFFTKPDKNFSNTKNYLPPEMKSFFTPGKPKSANVLGAVNKPLSS
AGKPLQSKASRMETASNDDSSSNPGSPLRSKTRLDSTEMDPSENEDISLKRADSTDKDIE
KPRGRKRGVTSSEDQDSKPKRGRKKAAANTTAVAETEDQWDEDNRPEDEQNSPPKKGRRG
RPPKSATPSQDTPAKGKRGRKKAAPPPEDEEEEEEEEEERVEEEAAAAAAAEEEEEEEDR
SSENMELKTKGGRQTRAPRRSQGSTESAESTPQKRRGRPPKAAQPAAKKPARGGRSKAAA
VKEDSEEEEEEEEEEEEEQQEDEPTPKGRKKPAGRRR
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggctcactctaaagctcgagtcacagatgggaaggtgacctaccccccgggggtcaag
gagatctctgacaaaatctccaaagaggaaatggtccgcagactcaagatggttgtgaag
accttcatggacatggaccaggactctgaggaagagaaggagctgtacctgaacctggcc
ctccacctggcctcagacttcttcctcaaacacccagacaaggatgtgcgtctgctggtg
gcttgctgtctggcagacatattcaggatttacgcccccgaggcgccctacacctcccca
gacaaactcaaggacattttcatgttcatcacaagacagctcaaaggactggaggacacc
aaaagcgctcagttcaacagatacttctatctgcttgagaacatagcatgggtgaagtcc
tacaatatttgctttgagcttgaagacagcaacgagatattcacccagctttacagaaca
ctcttccaggtcatcaacaacggccataaccagaaggtgcacatgcatatggtggacctg
atgagctccatcatctgcgagggagacactgtatcgcaggagctgttggacaccgtgttg
gtcaacctggtgcccgcacacaagaatttgaataaacaagcgtatgacctggccaaagct
ctgctgaagaggactgctcaggctattgaaccttacatcaccaacttcttcaaccaggtg
ctgatgctggggaagacctcagtcagcgatctgtccgaacatgtttttgacctcatcttg
gagctttacaacatagacagccacctgctgctctcggtgctgccgcagctcgagtttaaa
ctcaagagtaatgataatgatgagaggctgcaagtggtgaagctgctggctaagatgttt
ggagccaaggattctgagttggctgcacagaacaaacctctctggcagtgttacctgggc
aggtttaatgacatccatgtgcccatcaggctggaatgtgttaagtttgccagccattgt
ctcatgaaccacccagacttggccaaagatctcacagaattcttgagggttagatcacat
gacccagaggaggccatccgccatgatgtcatcgtgtctatagtaactgctgccaagaaa
gacttgtctctagtgaatgacgcattgctcaattttgtaaaggagaggaccttggacaag
agatggcgtgtacgtaaggaggccatgatgggcctggcatcgatctacaggaagtactcg
ctgcagggagagggaggcagggaggcctctaaacagatttcctggataaaagacaagctg
ctccatatctactaccaaaacagcatcgatgacaggctgctggtggagcgggtctttgcc
cagtacatggttcctcacaacctggaaaccgctgagaggatgaagtgtctttactacctg
tatgccaccctggacacaaatgctgtcaaagctttgaatgagatgtggaagtgccagaat
ctgctgaggcacaatgtcaaagacctgctggacttgattaaaaaacccaagtctgaagca
tcgagcaaagccgtatttgccaaagtcatggtgatcacaaagaacctgccagacccgggc
aaggctcaggactttgtgaagaagctggctcaggtcctggaagacgacgagcggatcaga
gatcagttggaaaccttggtcagcccctcgtgctcctgcaagcaagctgaagtctgtgtg
cgagacatcactaaaaagcttggcagccccaaacagcccagtaatccgtttctggaaatg
gtcaagttcctgctggagagaatcgctcctgttcacatcgacacagaatctatcagtgcg
ttgataaaacaggttaacaaatctatagatggaacagctgatgatgaggaggagggcgtc
cccactgaagaggccatcagagcaggactggaactgctgaaggtgctttcattcacacac
ccggtttcattccactctgcagagacgtttgagtctctgttgggttgtctgaagatggat
gacgagaaagttgcggaggctgctctgcagatcttcaagaacacaggcagcaagatggaa
gagagttttcctcacatcaaatccgttctgctgcctgtactgcaggccaaagccaagaga
gggccccctcgccaggccaagtatgccatccactgcatcaacgccatgttcaccaacaga
gacacacacttcgcccaaatcttcgagcctctgcacaaaggcctggaccctgctaacctg
gagcagctcatcactcctctgaccaccctgggtcacctggctcagctagccccagaacag
tttgctgcaccgcttaaatctctagtcgccaacttcattgtgaaggatctgctcatgaat
gacaggatcccgggcaagaagaccaccaagctttgggttcctgatgaggaggtgtcccca
gagactctggccaagatccagggcataaagctgatggtgcggtggttactaggagtgaag
aacaatcagagcaaatcgggcaactccacgctgaggatgctgactgctattctacacagt
gatggagacctaacggagcaaggcaggatgggtaaaccagacatgtcgaggctgcggctg
gcagcggcgtgcgccctgctgaagctggcacaggagccctgctatcacgaaatcatcacg
ctggaacaataccagctgtgtgctctcgtcatcaacgatgagtgctaccaggtgcgacag
tgtttttcccagaagctccaccggggcctttgtcgcctccgtctgcctctggaatacatg
gcagtgttcgctttgtgtgccaaggaccctgttaaggagaggagggctcacgctcgccag
tgcctggtgaaaaatgtcaacatacgcagagagtacctcaaacagcacgctgccatcagt
gacaagctgttctctctgctgccggagtacgtggtgccctacaccattcacctgctggca
cacgacccagactacgtcaaagtgcaggacatcgagcagctcaaagaaattaaagaagct
ctgtggtttgtcctggagattatcatggccaagaacgagaacaacagccatgccttcatc
aggaaaatggtggaaaatatcaaacagacgaaagatgcccaggcccccacagatcccaaa
accaacgagaaactctacacagtgtgtgatgtagccatgaacattatcatgtcaaagagc
accacctacagcctagagtctccgaaagaccctgtgctgcccacatgcttcttcaccaaa
cccgacaagaatttcagcaacacaaagaattatctccccccagagatgaagtctttcttc
acaccaggaaagcccaagtcggctaacgttttgggcgcagtaaacaagccgctgtcgtcg
gcggggaaaccgctccagagtaaagcttcacgtatggagacggccagcaacgacgactcc
tcgtccaacccgggctccccactacgcagcaagaccaggcttgacagcacagaaatggat
cccagtgaaaacgaggacatcagcctgaagagagcagacagcactgacaaggatattgaa
aagccccgcggtcgcaaacggggagtgacctccagcgaagaccaggacagtaaaccaaag
cgcggacgtaagaaggcagcagccaacacaaccgcagtggccgagacggaggaccagtgg
gacgaggacaaccggcccgaggacgaacagaacagcccgccgaaaaaaggacgcaggggc
cggcctccgaagtctgctactcccagtcaggatactcctgccaaagggaagaggggccga
aagaaggcagctcctcctccagaagacgaagaggaggaggaggaggaggaagaggagagg
gtggaggaggaagcagcagcagcagcagcagcagaggaggaggaggaagaggaggacagg
agcagtgaaaatatggagttgaagactaaaggaggccggcaaaccagggcgccgcggcga
tcacaaggcagcacagagtcagcagagtccacaccgcagaagaggagaggacgtccgccc
aaagcagctcagccagctgccaagaaaccagcgcgtggtgggcgatcgaaggcagctgct
gttaaagaggactctgaggaagaagaggaggaagaagaagaggaggaggaggagcagcag
gaggacgagccaacaccgaagggtcgcaagaagccagcggggcgaagaagatga
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