Anoplopoma fimbria (sablefish): 129113616
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Entry
129113616 CDS
T09102
Symbol
ddx52
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
afb03009
]
129113616 (ddx52)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129113616 (ddx52)
Ribosome biogenesis [BR:
afb03009
]
Eukaryotic type
90S particles
Helicases
129113616 (ddx52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
129113616
NCBI-ProteinID:
XP_054481995
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All DBs
Position
24:complement(11931722..11936773)
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AA seq
721 aa
AA seq
DB search
MMRMLTSDVWMRTDHAAAGMDAFELFRKLGAGAKFDLKRFGQDAARFKVARSHVGEASSN
ALSAIDYFGTGLTSTSQSSSPGLDDEDEEEEEDDDGGGGDDDDDDDEVGSESGDSGEGGK
RKQMDEERDLSTKKKRTKSNQVEAAGGQLKDMRGSGITWTSSLDRTIQTLPSDGKEKSSL
KRLKHLHQEKVNRIRSQHRINVHGCDVPDPVCTFEDLQSEYRLNPRVIQNLKEAGLNSPT
PVQMQAIPLMMHGRDLLACAPTGSGKTLAFCLPLLAQLQQPANLGFRAVVISPTRELANQ
TYRELLRMSEGVGFRVHIIDKASLAAKKYGPQSNKKYDILVSTPNRLVFLLKQDPPALDL
SSVEWLVVDESDKLFEGGRTGFREQLAAVFLACSGSKVRRAFFSATCTQDVEQWCRLNLD
NLVSVNIGHRNTAVESVEQELLFVGTENGKLVAMRDIIKKGFLPPMLVFVQSIDRARELF
HELVYEGINVDVIHADRTQQQRDNVVNSFRSGKIWVLICTALLARGIDFKGVNLVLNYDF
PTSSVEYIHRIGRTGRAGHQGKAITFFTENDKPLLRSIANVIKQAGCPVPDYMIGFKKIH
SKEKRRLEKKPPTRSTICTTPRFLMKTKGKAPNKGPKGEKKAAGGEQKGGKGSQTAVQQQ
KGEKKAKGQELKRRNKTQKDGGSEKPQKALQKAVTSSGVKLKKRKGKKVKPQEDQKKAVQ
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggatgttgactagtgatgtctggatgcgcacagaccacgctgctgcaggaatg
gacgccttcgagttgtttcggaagctcggagctggagctaaatttgacctgaagaggttt
ggtcaagacgctgctcggtttaaggtcgccagatctcacgtaggagaagcgtcctcaaat
gctttatctgcgatcgattactttggcacaggattaaccagtacatcccagagcagttct
ccaggactggatgatgaggatgaggaggaggaggaggatgatgatggtggtggtggtgat
gatgatgatgatgatgatgaggttggaagtgaaagtggagattctggtgaagggggcaaa
aggaagcagatggatgaagagagagacctgagcacaaaaaagaaaaggaccaaaagcaac
caggtggaagctgctggcggacaactgaaagacatgaggggaagcggcatcacctggacc
tcctcattagacagaaccatccaaactctgccgagtgatgggaaggagaaatcctcactg
aagaggctgaagcatcttcatcaggaaaaggtcaatcgtattcgctctcaacaccggata
aacgtgcacggctgtgacgtacctgaccctgtgtgcacgtttgaggacctccaatccgag
tatcgtctcaacccacgtgtcattcagaacctcaaagaggcaggcctgaactccccgacg
cccgtacagatgcaggcgataccgctcatgatgcatggtcgggacctcctggcctgcgct
cccacaggatcaggaaagactttggctttctgtctcccgctgctcgcccaactgcagcag
ccggccaacctgggcttcagagctgtggtcatctccccgaccagagaactggccaaccag
acctacagagagctgctccgcatgtcagagggagtaggatttagagttcacatcatagac
aaagcctctctggcagccaagaagtatggaccacagtcaaacaagaaatacgatatccta
gtcagtactccaaacagactcgtcttccttctcaagcaggatcctccagctctcgacctc
agcagtgtggagtggctggttgtggatgagtccgataagctgtttgagggcggtaggacc
ggcttcagagagcagctagccgcagtttttctggcctgttctggatcaaaggtgcggagg
gctttcttcagcgccacgtgcacacaagatgtagagcagtggtgccgtctgaacctcgac
aacctggtgtctgtcaacattggacacagaaatacggcagttgaatcggtggaacaggag
ctgctgtttgtcgggacggagaacggcaaactggtggccatgagggatatcatcaaaaaa
ggtttcctgcctcccatgctggtgtttgtgcagtctatagacagagcacgggagcttttc
catgagttggtgtacgaaggcatcaatgtagacgtgatccatgcagaccgcacacagcag
cagagggacaacgtagtgaacagtttcaggtctggtaagatttgggtgttgatctgcacg
gctctgcttgccagaggaatcgacttcaaaggagtcaacctcgtgctgaactacgacttc
cccaccagctctgtggagtacatccaccgcattggtcggactggtagagctggacatcag
gggaaggccatcaccttcttcacagaaaatgacaagccactgctccgcagcatcgctaat
gtcataaaacaagctggctgtcctgtacccgactacatgattggcttcaaaaaaatacac
agtaaagagaaacggagacttgagaagaaaccccccacaaggagcaccatttgcacaact
cctcgcttcttaatgaagacgaaaggcaaagcacccaataaaggaccgaaaggagagaag
aaggcagcgggtggagagcagaaagggggaaagggatctcaaacagcggtgcagcagcag
aaaggagaaaagaaggcaaaaggacaggagctgaagagaagaaataaaacacagaaagac
gggggaagtgaaaagccccaaaaggctttgcagaaggcggtgacttcctctggagtcaag
ttaaaaaagagaaaggggaagaaagtgaagccacaagaggaccagaagaaagcggtacaa
gagtga
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