Anoplopoma fimbria (sablefish): 129113718
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Entry
129113718 CDS
T09102
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
129113718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129113718
03036 Chromosome and associated proteins [BR:
afb03036
]
129113718
Transcription factors [BR:
afb03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
129113718
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
129113718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
129113718
NCBI-ProteinID:
XP_054482142
LinkDB
All DBs
Position
24:complement(17061330..17082897)
Genome browser
AA seq
1922 aa
AA seq
DB search
MSAAMLSSTTTNKLNVLVNKLHEYLAHSSVEDSNGTSSSGDADGLTNRSCSVRNLAGHAA
TVGGVDTKYSRRKPSVVIKHSGLDESGDSNASEDVDLPVCANGRLDITRLPKGTVLVRPE
PVDNGRDDFRGPEFRSRKSGVLRKEFSRRRGGVEHMEIVSCTACGRQVNHFQRDSFFRHP
VLKVLICKSCYKYYSSDDISKDGDGMDEQCRWCAEGGNLICCDFCSNAFCKKCILRNLGR
KELSGILESKWYCYVCSPEPLFDLVMACDNVLENMEHLWYQQRRKNRVEPEKSELYAMLP
HLPQNIPLDKWDHTGMDGNVMFNYNTLQISKDVTKKAKHLVDSTNILNRTFVNFIHTVTT
NKEAPAVRKLYLNSFLSVVKGLRKSLAALEDSLKEEFSDLDVMSCWEKFFSDDYDAKPVT
AADTASDIPDKRCLSDLQKLAAEHLEGYDSDSKGFTVGRTAHACPGKTMDSDSHVGRQRP
QKIGLKPSESGVNMTKKLVVKLTPVPMEQGPSSDAPEKDIHVNDEKSEGKDVSDAEETGA
VGAKAESKMSNDNSNASVHPEEEQGNRRSPRVKTTPLRRPSDVKSKESHSAADSDSDSDP
EETSSSVPAQKNEEQSVNRARDDSDSDEVPAALLERAAVTQSSDEPQSDENGGKASTKVA
KKCLFWLTKTTPMSPEKMRRKRKMLDRSPESDSSNRRVKSRRGSGTDSSSDDRDSQKKLQ
HLNTLRPIGKSHLVKREDEGVARKQGRLQTGKSKAKSHQKAMESPSSSSGDDDDDADDDS
GSEGSDQKMKPITEEVALLGAAAFHQSSGDEEQSGPSWAAEDDDDEDPENRIAKKMLLAQ
IKANYSSGDDISSDEETQEDESEDEKVKPGKKDNETDENEEELTSDSSDTKSDGPNSRHH
LLRHKLSLDERTPTDKARAEGVVATPETKQRASSEHLSSDSESDGDRNESELEDLGMCEE
LSQSEDEDGGNGPKSSRVSRKVKEAPSSDEQKTPVPCIWLSDSNSEKSDKEDADEENSDG
KGTPKGRKKIRRIIDDDNLRAETQEALREEQERCKRLASREQQMEDRREIIVIEDELSQV
VCPITTKLILDQDEETKEPVVQVHRNLVTKLKPHQVDGVQFIWDSCCESVKKANSAPGTG
CILAHCMGLGKTLQVVTFLHTVLLSENLKFKTALVVCPLNTILNWVSEFKKWQSNMKKDQ
VKVTELATIKHPPERIRALQRWHRDGGVMIMGYEMFRILSQAQKIKDEEGKKELKSILVN
PGPDFVVCDEGHILKNERSNISKSMNAIKTQRRVVLTGTPLQNNLNEYHCMVNFIKRNLL
GSLGEFRNRFINPIQNGQCADSTSRDVRIMKKRAHVLHAMLVGCVQRRDYSELTQFLPPK
HEYVLAVRISPHQYKLYRYYLDHVTGMGSNANTAKMRTGANLFKDFQVLSRIWTHPWCLQ
LNYISKEKKGYFEKKNKIKAAALWRREETTRAASGLRENEGKAAHTSDDSAAVIVGVSTG
AAAVEGEKATVSSRSQSQDEGWFKNLLSEEDAKIMEHSGKMVLLFEILRMAEDLEDKVLV
FSQSLISLNLIEDFLKASHHARHPSSFKAGSWIKNIDYYRLDGSTNAMSRKKWADQFNNV
SNVRGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDIQSIYRVYRFGQLKPVFVYRF
LAQGTMEEKIYDRQVTKQSLSYRVVDQQQIERHFTFFELTELYIFEPDLLDDPNSKKSKR
TTPVLPKDKVLVQLLETCKDQIVSFHEHESLLDHKQEEELSEAERKDAWAEYEAESSNPP
ASLNQNLLDTKTNEELVQLLNKSRADVSMAFLSMQRMTSQTIEDYMLRLRQQYPQLPEAE
VMAKAETWKVFDENEQGRRQALYRDILARQQTLTLSIQAILNSRRKQAMQTTVSTVIQPG
QT
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagcgatgctgagtagcaccactacaaacaagctgaatgtattggttaacaaa
ctgcacgagtacttggctcattcttctgttgaggacagcaatggaacatcgagctcaggg
gatgcagatggtctgacaaacaggagctgttctgtgaggaacttggcaggtcatgctgcg
acagtgggaggggtggataccaaatactcaagaagaaaaccatctgttgtcataaagcac
tccggactggatgaatctggggactcaaatgcgagtgaggatgtggatttaccagtttgt
gcaaatggtcgccttgacatcactagattaccaaaaggcactgtactggtgaggcctgaa
cctgttgataatggaagagatgacttcaggggtcctgagtttcgcagccggaaatcaggc
gtcctgcggaaagagttttcgagaagacgtggaggagttgaacacatggagattgtcagt
tgcactgcatgtggccgacaagttaaccatttccagagagattccttctttcgacatcca
gttctgaaagtacttatttgcaagtcttgctacaagtattactcaagtgatgacatcagt
aaggatggagatggcatggatgagcaatgcagatggtgtgccgaaggaggcaacttgatc
tgttgtgacttctgtagtaacgctttctgcaagaagtgtattctaagaaatttgggaagg
aaggagctgtctggcatcttggaaagcaaatggtactgctatgtgtgtagcccggagcca
ctttttgacctggtgatggcctgtgacaacgtgcttgagaacatggagcatctgtggtat
cagcagcgcaggaagaaccgagtggagccggagaaatctgaactttacgccatgttgccc
cacttgccacaaaacattcctttggataaatgggatcacactggaatggatggtaatgtg
atgttcaactataacacactgcagatttccaaggatgttaccaaaaaggccaaacattta
gtggactcaacaaacatcttaaaccggacatttgtcaatttcattcatactgtgacaaca
aacaaagaagcacctgctgttcgcaaactgtaccttaactcttttttgtcggtagttaaa
ggcttgagaaaatcccttgcagcactcgaggatagcctgaaggaagaattcagtgacttg
gatgtcatgagctgttgggaaaagttctttagtgacgactatgatgcaaaacctgttaca
gcagcagacacagcgtcagatatccctgataaaaggtgcttgagtgacttgcagaaatta
gcagctgaacatttggaaggttatgattctgactccaaaggcttcacggttgggagaact
gcacatgcctgccctgggaaaaccatggattcagattcacatgtaggtagacagaggccc
caaaagattggccttaaaccttctgaaagcggggtcaacatgactaaaaaactagtagta
aaacttacccctgtaccgatggaacaggggccatcctctgatgccccagagaaggacatc
catgttaacgatgagaagtcagaaggaaaggatgtatcagacgctgaagagacaggtgct
gtaggcgctaaagccgaaagcaagatgagtaatgacaactctaatgcatctgtacaccca
gaggaggaacaaggcaatagacgctcccctcgcgtgaagacaacacctttgcgtcgaccg
agtgatgtcaagtccaaagagtctcattcggcagcagacagcgacagtgactctgacccc
gaggaaacctccagctcagtaccagcccaaaaaaatgaagaacaaagtgtgaaccgagca
agggacgactctgactcagatgaagtccctgcggctctgctcgagcgagcagccgtaaca
caaagctctgacgaaccccagagcgatgagaatggtgggaaagcgtcaacaaaggtggcc
aagaagtgtctcttttggctcactaagaccaccccgatgtcaccggagaagatgcgccgc
aaacgcaagatgttggaccgctcacctgagtctgactcaagtaacagaagagtaaaatca
cgaaggggaagtgggacagattcctctagtgatgatcgagattcacagaagaaactacaa
cacttgaatacgctgaggccgatcgggaagtctcacctagtcaaaagggaagatgaaggt
gtggctagaaagcagggtaggctacagactgggaagtctaaggctaaatctcatcagaaa
gcaatggagtcgccatcctcgtcaagcggagatgatgatgatgacgccgacgacgactct
ggaagtgaaggaagtgatcagaagatgaagccaatcactgaagaagtggccttactgggg
gcagcagcattccaccaatcatcaggagatgaggagcagtctgggccctcgtgggcagca
gaggatgatgatgatgaagatccagaaaatagaatcgctaagaaaatgctattggcccaa
atcaaagccaactactcctcgggcgatgatatctcttcggatgaggagacgcaggaggat
gaatcggaggatgagaaggtcaaaccaggaaagaaagataatgaaacggatgaaaatgaa
gaagaattgacttcagactcatctgacaccaagtcagatgggcccaactccaggcaccat
cttctccgccacaaactgagcttagatgaaagaacgccaactgacaaggccagggccgag
ggtgtagtagcaacgccggagaccaagcaaagagccagcagcgaacacctgagctctgat
agtgaaagtgatggtgacagaaacgagtcagagctggaggatcttgggatgtgcgaggag
ctgagtcagtccgaggatgaggacggtggaaacggacctaaaagctccagagtatcccgt
aaagtgaaggaggcacccagtagtgacgagcagaagacaccagtgccctgcatttggttg
tctgactccaacagtgaaaagagtgataaagaggatgcagatgaggagaacagcgacggt
aaaggcacccctaaaggaagaaaaaagatccgcagaatcattgatgatgacaatctccgt
gctgagacccaggaagccctcagagaggagcaggagagatgcaaacgtctggcaagcagg
gagcaacagatggaggacaggagagagattattgtgatagaggatgagctgtctcaagtg
gtgtgccccatcaccaccaagctgatcctggatcaggatgaagagacaaaggagcctgtt
gttcaggtgcacaggaacctggtgacgaaactgaagcctcaccaggtggacggtgtccag
tttatttgggacagttgttgtgagtctgtgaaaaaggccaactctgctcctggaacaggc
tgtatattggcacactgcatgggcctgggaaagactctgcaggtggtaactttcctccac
actgtgctgctgtcagagaacctgaaattcaaaacggccctggtcgtatgtccgctgaac
actatcctcaactgggtcagcgagttcaagaaatggcaaagcaacatgaaaaaggatcaa
gtaaaagtcacagaactggctacaataaagcaccctccagaacgaatcagggctcttcag
aggtggcatagagacggaggtgttatgataatggggtatgagatgttccgcatcctgtca
caagcccagaaaatcaaggatgaggagggcaagaaagagttgaagagcatactggtgaat
ccaggtccagactttgtggtttgtgacgagggacacatcctgaagaatgaaagatccaat
atctccaaatctatgaatgccatcaagacccagcggagagtggtgctaactggcacacca
ctacaaaacaacctgaatgagtaccactgcatggtcaatttcatcaagaggaatctactg
ggctcgctgggtgaattcagaaaccgctttatcaaccccatacagaacggccagtgtgct
gactccacatcaagagacgtccgaatcatgaagaaacgagcacatgtacttcatgcaatg
ttggttggatgtgtgcagagaagagattactccgagttgactcagtttctgcctcccaaa
cacgagtatgtgctggcagtgaggatttctccacatcagtacaagttgtaccgctactac
ctcgaccacgtcaccggtatgggctccaacgctaacacagctaagatgagaactggagca
aacctgttcaaggactttcaggtgctcagcagaatttggactcatccctggtgccttcag
ctcaactacatcagcaaagaaaaaaagggatattttgaaaagaagaacaaaattaaagcg
gcagctctgtggagacgtgaagaaaccactagggctgcaagtggactgagagagaacgaa
ggaaaagcagctcataccagtgacgacagtgcagcggttattgttggtgtgtccacaggc
gctgcagcagtggaaggagagaaagcaacggtcagctcaaggtctcagagtcaggatgag
ggctggttcaagaacctgctgtctgaagaggacgccaaaatcatggagcactcagggaag
atggtgctcttgtttgagatcctcagaatggctgaagacttggaagataaagtgcttgtg
tttagtcagtcattgatctccttaaacctgattgaggatttccttaaggcttctcaccat
gcaagacacccatcgtcattcaaagcgggcagctggatcaaaaacattgattactatcgt
cttgatggctccaccaatgccatgtcaaggaagaaatgggcagaccagttcaataatgtc
tccaatgttcgcgggcgattatttctcatctcaacgagagctggctcacttggcatcaac
ctggttgcagccaacagggtcatcatcttcgatgcctcatggaatccctcatatgacata
cagagcatttacagagtgtaccgcttcggtcaactgaaacctgtgtttgtttaccgcttc
ttggctcagggcaccatggaggagaagatctatgatcgtcaggtgaccaagcagtctttg
tcctatcgagtcgtggatcagcagcagattgagaggcacttcaccttttttgaactgact
gaactttacatatttgagccagacctgctggacgacccaaactctaagaaaagcaaaaga
accacccctgtgttgccgaaggataaggtcctggtacagctattagagacatgcaaagac
cagatagtgtctttccatgagcatgaatctctgttggaccataaacaagaggaggagctc
agtgaggcagaacgcaaagacgcctgggccgagtacgaggccgagtcttcaaaccctcca
gccagcttgaaccagaacctcttggatacgaagaccaatgaagagctagtgcaattgctg
aacaagagcagagcagatgtatcaatggcgttcctgtcaatgcagaggatgacttctcaa
actatcgaggactacatgttacgactgaggcaacagtatcctcagctgcctgaggccgag
gttatggccaaagctgagacttggaaagtgtttgatgagaacgagcagggacgtagacag
gccctctatcgagacattcttgcacggcaacaaacgctcacactcagcattcaggccata
ctgaacagtcgaaggaagcaagcgatgcagacgaccgtgagcactgtgatccagcctgga
cagacttga
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