Anoplopoma fimbria (sablefish): 129114473
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Entry
129114473 CDS
T09102
Symbol
supt5h
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129114473 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129114473 (supt5h)
03019 Messenger RNA biogenesis [BR:
afb03019
]
129114473 (supt5h)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
129114473 (supt5h)
RNA polymerase I system
129114473 (supt5h)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
129114473 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
129114473
NCBI-ProteinID:
XP_054482638
LinkDB
All DBs
Position
1:1755367..1780392
Genome browser
AA seq
1096 aa
AA seq
DB search
MSDSEDSDFSDAQSERSSDGEAEEVNEEETGSPVGSDKVAEEEGEDLLEEEDEYDEEEEE
DDDDRPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKVNEEAEVSNIDHVVLDE
DHSGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHYSGGSEELSDDITQQQLLPGVKDP
NLWTVKCKIGEERVTAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKA
AIEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVE
PSQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGD
FMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHV
KVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGX
LVQLDPQTVGVIVRLERETFQVLNMHGKVMTVRHQAVNRRKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFT
VGGFAPMSPRISSPMHHGGGSSPQRGGGGGGGGGGGRRRRRRRGMGRGRGRRDNELIGQT
VRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHSGMTSTHGRTP
MYGSQTPMYGTGSRTPMYGSQTPIHEAGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNT
PSRNEEEYDFGFDDEPSPSPQGYGGXPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTE
QYSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPV
GYSPMTPGAPSPGGYNPHTPGSNIEQGGSDWVTTDILVRVKDSFMDLMGQTGVIRSVTGG
MCSVFMQESEKVVSISSDHLEPITPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELD
DQLKILNLRFLGRLDH
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagcgaggacagcgacttctccgacgcgcagagtgagcgcagcagcgacggg
gaggccgaggaggtgaacgaggaggagacgggcagccctgtgggcagcgacaaggtagca
gaggaggagggggaggacctgctggaagaagaggacgagtacgatgaggaggaagaggaa
gacgatgatgaccgtcccaggaagaagccgaggcacggagggttcatcctggacgaagcc
gatgtggacgatgagtatgaggatgaggaagaccagtgggaggaaggagctgaagacatt
ctggagaaagttaacgaggaggctgaagtgtcaaacatcgaccatgtggttctggatgaa
gaccactcgggatccagacggctgcagaacctctggagagactccagagaggaggcgctg
ggtgaatattacatgaggaagtatgccaagtcctcaggaggagagcattactccggaggg
tccgaggagctttctgatgacatcacccagcagcagctacttcctggtgtcaaggatccc
aatctgtggacggtcaagtgtaagatcggagaggagagggtgacggccatcgctctgatg
aggaagttcatcgcctaccagttcaccgacacgcctctgcagatcaagtccgttgtcgcc
ccggaccacgtcaaaggctacatctacgtggagtcgtacaagcagacgcacgtgaaggcg
gccatcgaaggcatcgggaacctgaggatgggcctgtggaaccagcagatggtccccatc
aaggagatgacggacgtcctcaaggtcgtcaaagaggtcaccaacctgaagcccaagtcc
tgggtccggctgaagagaggcctgtacaaggacgacatcgctcaggtggactacgttgaa
ccgagtcagaacaccatctctctgaagatgatccctcgtatagacctggaccggatcaag
gccaagatgagtctgaaagactggttcgctaagaggaagaagttcaagcggccggctcag
aggctgtttgatgctgaaaagatcaggtctctgggaggagaggtcagccacgacggagac
ttcatgatctttgaggggaaccgttacagccgcaaaggattcctgttcaagagcttcgcc
atgtcggctgtgatcacagacggagtgaagccgacgctgtcagagctggagaagtttgag
gaccaacctgaaggaatcgacctggaggtggtcacagagtcaggtaaggagcgtgaacac
aacctccaggccggtgacaacgtggaggtttgtgagggagagttgatcaacctgcaggga
aagatcctcagtgtggacggcaacaagatcaccatcatgcccaaacacgaggacctgaag
gaccctctggagttcccggctcacgagttgagaaaatatttccggatgggcgaccacgtg
aaggtgatcgccggtcggtacgagggcgacaccggcctcatcgtcagggtggaggagaac
ttcgtcatcctcttctccgacctcaccatgcacgagttgaaggttttgcctcgagacctg
cagctctgctcggagacggcgtccggcgtcgatgcaggagggcagcacgagtgggggnag
ctggtccagctggacccccagaccgtcggggtcatcgtccggctggagagagagacgttt
caggtgttgaacatgcacgggaaggtcatgacggtgcggcaccaggccgtgaaccgcagg
aaggacaaccgcttcgccgtggcgctggactcggagcagaacaacatccacgtcaaggac
atcgtcaaggtcatcgacgggccgcactcgggccgtgaaggggagatccgtcacttgttc
cgaggcttcgccttcctccactgcaagaagctggtggagaacggaggcatgttcgtctgc
aagacccgacacctggtgctggctggtggatccaagcccagagatgtgaccaacttcacg
gtgggagggtttgctccaatgagccctcggatcagcagtcccatgcatcacggaggagga
agttctccacagagaggaggaggtggaggaggaggaggtggaggaggaaggaggaggcgg
cggaggagggggatggggcggggccgaggacgccgagacaacgagctgattggacagacg
gtccgcatctctcagggtccctacaaaggttacattggtgtggtgaaggacgcaacagag
tctacagccagagtggagctgcactccacctgtcagaccatctctgtggacagacagcgc
ttaacgaccatgggagctaagagacacagcgggatgacctccacccatgggcgtaccccc
atgtacggctcccagactcccatgtacggcaccgggtccagaacgcccatgtacggctct
cagacgccgatacacgaggctggaagccgtacgcctcactacggctctcagaccccactg
catgatgggagcaggacgccgggccagagcggagcctgggaccccagtaaccccaacaca
ccttcaaggaacgaagaggagtacgacttcggcttcgacgacgagccctccccgtcccct
cagggctacgggggancccccaacccccagacccccggttacccagaagtcccctctcca
caggtcaaccctcagtacaaccctcagacgcctggcacgcctgctatgtacaacacagag
cagtattccccctacgccgccccgtcccctcagggctcctaccagcctagtcccagtcct
cagagctaccaccaggtggcgccctcgccggtcggctaccagaacacacactctccagcc
agctaccacccgacaccctcccccatggcctaccaggccagtccgagtcccagtccggtg
ggctacagtcccatgacgcccggagcgccctctcctggaggctacaacccccacaccccc
ggctccaacatcgagcagggcggcagcgactgggtgaccaccgacatcctggtccgggtg
aaggactccttcatggacctgatggggcagaccggggtcatcaggagcgtcacgggaggg
atgtgttcagtgttcatgcaggagtcagagaaggtggtcagcatcagcagcgatcacctg
gagcccatcactcccaccaagaacaacaaggtgaaggtgatcctcggggaggaccgcgag
gccacggggatcctgctgagtatcgacggagacgacggcatcgtccgcatggagctggac
gaccagctgaagatcctcaacctgaggttcctgggtcgcctggaccactga
DBGET
integrated database retrieval system
