Anoplopoma fimbria (sablefish): 129115663
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Entry
129115663 CDS
T09102
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129115663
03015 mRNA surveillance pathway
129115663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129115663
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129115663
5.6.2.5 RNA 5'-3' helicase
129115663
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129115663
mRNA cycle factors
Common to processing body (P body) and stress granule
129115663
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129115663
NCBI-ProteinID:
XP_054482954
LinkDB
All DBs
Position
3:23469166..23484056
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQSQLDHQVNGPD
GILQNGDDPVIKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDNITVRWDLGLNKKRIAYFSLPKTDSDMRLMQGDEICLRYKGDLAAPWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHN
QTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGGRFMSTAMYDAREALIPGSVYDRSSSGRSSNMYFQTHDQIGMIGTGPSPMTSLNIPI
PFNLVMPPIPPPGYIGQVNGPSAGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHSGGNG
GADRHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctctcagactctgacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagactcaaggccagagccagctggaccaccaggttaatggccctgac
ggcatactacagaatggtgatgaccctgtcataaaagccagtcagctgctagcagagttg
aactttgaggaggatgaggaggacacctactacaccaaggatctgcctctacatgcctgc
agttactgtgggattcatgatccagcctgtgtggtatactgcaacaccagcaagaagtgg
ttttgtaatggacgcggaaacacatccggcagccacattgtaaaccacctggtgagagca
aagtccaaggaggtgaccttgcataaagatggccctctgggggaaacagtactggagtgc
tacaactgtggctgtcgcaatgtcttccttctgggcttcatccctgccaaagccgactca
gtagtggtgctactgtgcaggcagccatgtgccagccagagcagcctgaaggacatcaac
tgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctggctggtc
aaaatcccttcagagcaggagcagctcagggctcgtcagatcaccgcccagcagatcaac
aagctggaggaactctggaaggaaaatcccactgcaacattggaggacctggagaagcct
ggtgtggatgaggagccccaacatgtgctgctccgctatgaggatgcgtaccagtaccag
aacatctttggtcctcttgtgaagctggaggctgactacgataagaaacttaaagagtct
cagactcaagacaacataactgtcagatgggacttgggcctgaataaaaagaggattgct
tatttcagtcttcccaagacagactcagacatgcgactgatgcagggagatgaaatttgc
ctgaggtacaaaggagacctggccgctccgtggaaaggcatcggacatgtcatcaaggtc
cccgataactatggtgatgagattgccatagagctaaggagcagtgccggggctccagtg
gagatcccacacaactttcaggtcgactttgtgtggaagtccacttcctttgacaggatg
cagagtgccctgaagacgtttgcggtggatgaaacttccgtgtctggttacatctaccac
aagctgctgggacatgaggtagaggatgtggtcatcaagtgtcagctgcccaaacgcttc
actgctcaaggcctgccggaccttaaccactcacaggtgtacgctgtgaagacagtgctg
caacgtcctctcagtctgatccaaggtcctcctggcacaggaaagaccgtaacctctgcg
accatcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgctcccagt
aacatcgccgtcgaccagctgacagagaagatccaccagacaggcctcaaggttgtgagg
ctgtgtgccaagagcagggaggctatcgactcgcctgtgtccttcctggctctgcacaac
cagacccgtaacatggacagtatgccagaacttcagaaactccaacagctgaaggacgag
actggagagctttcctcctcagacgagaagcgctacagagctctgagacgcaccgctgag
agggagctgcttatgaatgccgatgtgatctgctgtacctgtgtcggggcaggggatcct
cgtctggccaagatgcagttccgctcgatcctgattgatgagagcacccaggccactgaa
cccgagtgcatggtgcctgtggtcctgggggccaaacagttgatactggtgggggatcac
tgccaactgggccctgtggtgatgtgtaagaaggcagccaaagctggtctgtcccagtct
ctgtttgagcgtctggtagttttggggatccggccaatccgtctgcaggtccagtaccgc
atgcatccggccctcagcgccttcccctccaacatcttctatgagggctctctgcagaat
ggagtcactgccggggaccgtgtgaagaaaggctttgacttccagtggccgcagcctgac
aagcctatgttcttttatgtcacccaaggccaagaggaaatagccagctctggaacatcc
tatctcaacaggactgaggcagccaatgttgagaaaataaccacaaggttgctgaaagct
ggagcaaaacccaatcagattggcatcataacaccctatgagggacagaggtcctacttg
gtccagtacatgcagttcagtggctccctccataccaaactctaccaggaggtggaaata
gccagcgtggatgcctttcaaggcagagagaaggatttcatcatcctgtcctgtgtgagg
gccaatgagcaccagggcatcggcttcctcaatgatcccagacgtctcaatgtggcactc
accagggccaggtatggtgtgattattgtgggaaaccccaaggccctgtccaagcagcct
ctgtggaaccacctgttgaactactacaaggagcagaaggtcctggttgaagggcccctt
aacaatctgagggaaagcctcatgcaattcagcaagccccgcaagcttgtcaacaccatc
aaccctgggggtcgatttatgagcacagccatgtatgatgccagggaagccctcattcct
ggatctgtttacgaccgcagcagtagcggacgttcgtccaatatgtattttcagacccac
gaccagattggtatgatcggcacaggccccagtcccatgacttccctgaacatccccatc
cccttcaaccttgtgatgccccccatacctccacctgggtacattggtcaggtcaatgga
ccctctgcaggtcgtggtggaggaatgaaaggcaaggcaggcagtggaggaggaggcggg
actcgaggtgggcgtcaaagaaaccgcggcaacatgggaaaccacagtggaggaaatgga
ggagcagaccggcatggaggccacatgagtggaagccaggccagccaggatctgggctcc
cagcccttctcccaggggcctctgacgcagggctacatcaacatgagccagccgtctcag
atgagccagcccggactctcccagcctgaactctcacaggacagttacctaggagacgag
ttcaagtcccagattgatgtggctttgtcccaagactccacctaccagggggagcgggcc
taccaacacggtgttactggactgtcccagtactag
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