Anoplopoma fimbria (sablefish): 129116159
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Entry
129116159 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain-like
KO
K06237
collagen type IV alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129116159
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129116159
09142 Cell motility
04820 Cytoskeleton in muscle cells
129116159
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129116159
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129116159
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129116159
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129116159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129116159
NCBI-ProteinID:
XP_054483168
LinkDB
All DBs
Position
Unknown
AA seq
1619 aa
AA seq
DB search
GAPGPLGRQGPQGPPGFPGPQGPQGQKGHRGDEGPTGAGGLKGDSGSVGVPGFPGLEGLP
GHPGPAGGPGFPGLDGCNGTRGERGDPGLPGRPGPDGELGFAGLKGFPGDQAVRFIQYAG
IPGDVGLVGLPGRQGELGLAGPMGVLGPTGPDGTNGIPGRPGSRGPPGEKGRSLPGQKGD
EGDQGLRGRGLKGPGLFEYVDPPEDLYIKGEKGTQGFKGVCGRSGLPGLDTLQGIKGEKG
IVGFPGPRGFYGNPGYPGERGFKGIRGSPGLPGLIGREGPKGMLGDPGPKGLPQEVNVTH
SGDIGELGAPGLRGPPGDMGLMGMHGPPGAPGRSIPGPEGVLGQSGVPGSRGDKGDPGPL
YRDPPTPGEPGKPGCPGPKGLKGEQGRPGSYCFPGAPGESGDPGDQGPLGTMGFPGFKGG
PGACSCGPTFIVRGPPGSVGDPGSPGYPGPQVAPGPRGENGFPGDTGEQGQQGLGGFPGV
KGFKGQKGDFIVVDFKGEKGNQGQLGPSGRQGFSGRRGLDGPLGAPGNPGPEGESFPSSP
GDRGPPGLSGQKGSSGPSGPPGRGVVGAVGQRGDPGDPGPEGLPGPPGPKGVRGDTLPCV
PRNPGPPGEKGDTGDAGYRGMPGPPGFRGLTGPDGPKGDKGRPGLPGPPGGQGPPGFVGD
TGEEGPEGFSYGGDPGSPGLPGSSGLRGPAGDSDVGPSGPIGVPGRPGSPGPKGVPGPPG
ITGLKGLLGLAGGPGVQGQRGQDGAPGKPGPQGPTADFCDPGKPGSRSLSGPQGPIGPPG
FYGEKGEIGQVGPPGIGPQGPRGKPGSPGFPGYPGPQGPPGPGGDSGLPGFDGQKGLVGP
RGQDGGPGTPGRTGALGALGRTGERGSNGRDGGPGCEGRKGEKGCKGVLGPQGETVGVPI
RGGRGKDGPSGINGFHGPRGNKGVGGADGKPGYPGINGPTGIVGLPGPPGRYGQPGPPGS
PGRTGPPGFIGFPGETGDPGDLGCPGNDGEPGSQGCTGPTGDKGDSHGSPGPPGDKGPPG
DLGPSGPPGPRGDPEGPGFIGAPGQRGCKGDLGHQGELGPPGVVGPSGPRGRSGLPGLPG
KAGADGPPGPPGFQGLPGPPGPLGLHGLDGLKGVKGDMGTRGLGQTGPQGSIGLPGDKGP
PGPPGPVGSSQPGPPGPTGTPGPKGPPGDSGPPGESGPDCKSPIPGPRGDPGPGGTDGDP
GCAGDVGDPGQNPPVPGDDGDNGDTGCLGPGGPQGPQGPEGTPGNPGNPGVKGLRGPSGL
MGLPGNRGPRGCTGPNGPPGPRGSTGPVGPKGEKGRVSPCPTYPPDXPGPPGPPGLPGMD
GDVGIRGEIGWIGPKGRKGDLGSEGPIGPEGSPGPDGGRGGPGRLGESGVLGAKGDPGPM
GDQGLPGPSKNLNSGFLLVLHSQSKMVPSCPLNMRVLWVGYSLLYLEGQEKAHTQDLGQA
GSCMRVFSTMPFSSCNMGTCSYASRNDKSYWLSTTAAVPSLPVGGASIEEHISRCVVCEA
SSSPVALHSQTSTHPDCPPHWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPF
VECQGPRGTCHYFANIYSFWLTRVERTASNRDPASSPTTLTEGWQQRESIGRCNVCMRE
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
ggtgctccaggtcctctggggcggcagggccctcaggggcccccaggcttcccgggccct
caggggcctcaaggacagaagggccatagaggagacgaggggccgacaggagcaggagga
ctgaaaggagactcggggagtgtcggcgttcccggttttccaggtttagaaggactcccg
ggtcacccgggtcctgctggaggtcctggttttccaggtctggacggatgtaacggaacc
agaggagagagaggagaccctggactccctggaagaccaggacctgatggagaactgggt
ttcgctggactgaagggatttccaggagatcaagccgtgagattcatacagtacgctgga
atacctggagacgtcggtctggttggacttcctggtcgacagggtgaactgggtctggcc
ggtccgatgggagttctgggtcctacgggaccggacgggaccaacggtatccctggtcgg
cccggctccaggggtccacctggagaaaaaggtcgatctctgccgggacagaaaggagac
gagggggatcagggcctcagggggaggggcctcaaggggccggggctgtttgagtacgtc
gaccctccagaagacctgtacatcaaaggagaaaagggtactcaggggtttaaaggagtc
tgtggaaggtcaggactgccgggtttggacactctccaagggatcaaaggggagaaaggc
attgtgggatttcctggtcccaggggattttatggaaaccccggttatcccggagagaga
gggttcaaggggattcgaggaagtccaggtctcccaggtctgattggacgagaaggtcct
aagggcatgctgggagatccaggtcctaaaggcctccctcaggaggtgaacgtcacacac
tcaggtgacatcggagaactcggggcccccggactgaggggccccccaggagacatgggg
ctgatgggaatgcacggcccccccggagcccccggcagatccatacctggtccggaaggt
gttttgggtcagagtggagttccaggatccagaggggacaaaggagatccaggtccgttg
tacagagacccacccacacctggagaacctggaaaaccaggatgccccggacccaaagga
ctgaagggagaacaggggagaccaggtagttactgttttcccggggccccaggagagtct
ggggatccaggtgatcaggggcccctggggaccatgggcttcccagggtttaaaggtggt
cctggcgcctgttcttgtggccccacatttatagtgaggggcccccctggcagtgtgggt
gacccggggtctccggggtatccaggacctcaagtggccccggggcccagaggagagaac
ggttttcctggagacacaggagaacaaggacaacagggcctgggtggatttccaggtgtg
aaagggttcaaaggtcagaaaggagatttcatcgtggtggattttaaaggtgagaaagga
aaccagggccagctgggcccttcaggcagacaaggattctcagggagaagagggctcgat
gggcccctgggggcccctggaaacccaggccccgagggtgaaagtttccccagttctcct
ggagacagaggcccccctggtctttcagggcaaaagggttcatcaggaccttcagggccc
ccggggcgaggtgtagtcggagcagtaggacaaaggggggaccctggggacccaggacct
gagggactccctggccccccaggaccgaagggggttagaggggacactctgccctgtgtg
cccagaaaccccggaccccccggagagaaaggagacactggagatgcaggttacagagga
atgccgggtcctccaggttttcgtggcctcactggacctgatggacccaaaggtgacaaa
ggccggcctggactacctggaccacctggaggacaaggacctccaggttttgttggcgat
accggagaagaaggacctgaaggcttcagttatggtggagatccaggctctccggggctc
ccaggctcttctggactcaggggcccagcgggagactctgatgtcgggccctcaggaccc
attggcgtccctggacgaccaggctctccgggacctaaaggagtccctggcccccccggc
atcaccggacttaaaggactcctgggtctggctgggggccccggagtgcagggccagaga
ggacaggatggggccccaggcaaacccggcccccaggggcccacagccgacttctgtgac
cccggaaaacctggttccaggagcctctcaggccctcaggggcccataggaccaccaggt
ttttacggggagaaaggtgagatcgggcaggtgggtcctccaggtattggccctcaaggc
cctagaggtaaaccgggctctccaggtttcccggggtatccggggcctcagggcccccct
ggtcccggcggagactccgggctgccggggttcgatggtcagaaaggtctggtggggccg
cggggccaggacggagggccagggacccctggacggaccggggccctcggagccctgggg
aggacgggggagcgagggtccaatggacgagacggaggtccaggatgtgagggccggaaa
ggagagaaaggctgtaaaggggtcctggggcctcagggagagaccgtgggggtccccatc
agaggaggcagagggaaagacggaccatctggcatcaacggcttccatggaccacgagga
aataaaggtgtgggaggagctgatggaaagccggggtatccgggcatcaacggacccacg
ggcatcgtaggacttcctggaccccctggacgctacggacaaccgggacctccaggatca
ccgggacgcacaggaccaccaggattcatcggcttcccaggggagaccggagatccgggt
gacctggggtgtccggggaacgatggagaaccgggtagccaaggatgtactggacccaca
ggtgataaaggagactcccacggtagtcctggtccacctggagacaaggggcctcctgga
gacttggggccctcaggacctcctggacctcgaggagatcctgaaggacccggtttcatc
ggggcaccggggcagagaggatgcaaaggagatctaggccatcagggggaactgggccca
ccaggtgtggtgggtccttcaggtcccagaggtcgttccggtcttccaggtcttcctggt
aaggcgggtgctgatggtcctccaggacctccaggctttcaaggactcccaggtcctcct
ggaccactgggcctccatggactggacggactgaaaggagtgaagggagacatggggacc
agaggtctgggtcaaactggtcctcaaggttctattggtcttccgggggataaaggtcct
ccaggtcccccaggacccgttggttcatctcaaccgggcccaccaggacccactggcacc
ccaggacccaaaggaccaccaggggattctggacctccaggtgaatctggaccagactgt
aaaagtccaatcccaggacctcgtggagatcctggtcccggtggaacagatggagatcca
gggtgtgctggtgacgtgggagatccaggccagaaccctccagtacctggagatgatggg
gacaacggggacacagggtgcctgggaccagggggcccacagggacctcaggggcccgaa
ggaacaccaggcaacccgggaaatccaggagtgaaaggtttacggggaccttctggtctg
atgggactacctggtaatcggggtcctagaggctgtaccggtcccaatggacctccagga
ccaaggggatccactggaccggtgggtccaaagggggaaaagggacgggtctcaccctgc
ccgacttacccccccgacnnaccggggcccccaggacctccaggactccccggtatggat
ggagatgtcggcatccggggagaaatcggctggataggacccaaaggtcggaagggggac
ctcgggtctgagggacccataggccctgaggggtccccgggtccagatggaggccgagga
gggccaggccggctaggggagagtggagtcttgggagccaaaggtgatcccggtccaatg
ggtgaccaaggtcttcctggaccatccaaaaacttgaactcgggcttcttgttggtgttg
cacagccaatccaagatggttccctcctgtccactgaacatgagggtcctgtgggtcgga
tacagtctgctgtacctggagggtcaggagaaggctcacactcaggacctgggtcaggcg
ggttcttgtatgcgggtgttctccaccatgccgttctcctcctgtaacatgggaacctgc
tcctacgccagccgtaatgacaaatcctattggctgtccaccacggcggccgtccccagc
ctcccggtgggcggagcctccatcgaggagcacatcagccgctgtgtggtgtgtgaagcc
tcctcctcacccgtcgccctgcacagccagacctccacccacccagactgccccccccac
tggaggagtctgtggaccgggtactccttcctcatgcacacgggcgccggcgacgaaggc
ggcggccagtctctgacatcatcgggcagctgtctgacggacttccgggcccagcccttc
gtggagtgtcaggggccccgaggaacctgccactacttcgccaacatctacagcttctgg
ctgacccgggtggagcggaccgcctccaaccgagaccccgcctcctcccccaccacgctg
accgagggctggcagcagagggagagcatcgggaggtgcaatgtctgcatgagggagtga
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