Aliarcobacter faecis: AFAEC_0979
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Entry
AFAEC_0979 CDS
T06664
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afc
Aliarcobacter faecis
Pathway
afc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFAEC_0979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afc03019
]
AFAEC_0979
Enzymes [BR:
afc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFAEC_0979
Messenger RNA biogenesis [BR:
afc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFAEC_0979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
BKACE
SNF2-rel_dom
Amidohydro_1
Tuberin
ERCC3_RAD25_C
Polyoma_VP2
Motif
Other DBs
NCBI-ProteinID:
QKF73153
LinkDB
All DBs
Position
complement(965012..966121)
Genome browser
AA seq
369 aa
AA seq
DB search
MLPILENLIEKKDENSVLRALILVPTRELAKQLVNAIDDYSKYLDIKRVAIFGGISSKEQ
EKKLTNGVDIAVATTGRLLEHIKNNTINLSSVEKVVIDELDTMLDMGFLEEVEKILPNIG
KNRQISMFSATINSTVKKLAKEFLNNPVVIEVTNQREHVENIEHQIVLVDEEKKAELLSY
LIGSKNIAQTLVFVNKKAQADSLVENLNLDDLKASCIHGDIRQSSRALALRKFKEKELRV
LVCTDIAARGIDIENLPCVINFALPETVNDFTHRVGRTARAGNDGVAITLLSVKDYKIMA
EIEKELILKIPRVELKGFETTEKKPRVKQSKPKSLKEKKINSKKRQIEDKTKSSKSTKTN
KKRKITKRG
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgctccctattttagaaaatttaatagaaaaaaaagatgaaaatagtgttttaagagcc
ttaatcttagttccaacaagagaattggcaaaacaattagtaaatgcaattgatgattac
tcaaaatatttagatataaaaagagttgctatttttggtggaatttcaagtaaagaacaa
gaaaaaaaattaacaaatggagttgatatagctgttgcaacaacaggaagattacttgag
catataaaaaataatactataaacctttctagtgtagaaaaagttgttattgatgagctt
gatactatgcttgatatgggatttttagaagaagttgaaaaaatcctaccaaatatagga
aaaaatagacaaatttcaatgtttagtgcaacaataaactcaacggttaaaaaacttgca
aaagagtttttaaataaccctgttgtaattgaagttacaaaccaaagagagcatgttgaa
aatattgaacatcaaatagttcttgtagatgaagaaaaaaaagctgaacttttatcatat
ttgattggatccaaaaatatagctcaaactttggtttttgtaaataaaaaggcccaagct
gatagtttggtagaaaatctaaatcttgatgacttaaaagcctcttgtattcatggagat
ataagacaaagtagtagggctttagctttaagaaaattcaaagaaaaagaattaagagtt
ttagtttgtacagatattgcggcaaggggaattgatatagaaaatcttccttgtgttata
aattttgctctacctgaaactgtaaatgacttcacacatagagttggaagaacagcaaga
gcaggaaatgatggagttgccattacacttttaagtgtaaaagattataaaataatggct
gaaattgaaaaagaattaatacttaaaattccaagagttgagttaaaaggttttgagaca
acagaaaaaaaaccaagagtaaaacaatcaaagccaaaatctttaaaagagaaaaaaatc
aactctaaaaaaagacaaattgaagataaaacaaaatcttcaaaatctactaaaacaaac
aaaaaaagaaaaatcacaaaaagaggttaa
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