Aliarcobacter faecis: AFAEC_1960
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Entry
AFAEC_1960 CDS
T06664
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
afc
Aliarcobacter faecis
Pathway
afc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFAEC_1960 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afc03021
]
AFAEC_1960 (rho)
03019 Messenger RNA biogenesis [BR:
afc03019
]
AFAEC_1960 (rho)
Transcription machinery [BR:
afc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AFAEC_1960 (rho)
Messenger RNA biogenesis [BR:
afc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AFAEC_1960 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
ATPase_2
S1CSD-TOTE-2
AAA_22
AAA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QKF74111
LinkDB
All DBs
Position
complement(1953982..1955304)
Genome browser
AA seq
440 aa
AA seq
DB search
MEESKEELKSKTTKKTRTHIPVDGYKIEQLRELPIETLLDIANDLDVENPQELKRQDLMF
MILASQIDAGGFILFTGILEIKEGGFGFLRAIDGNFSDTSNDSYVSATQIRKFALRTGDI
VTGQVRPPNKDSEKYNALLKIEAINYLPVKDSKNRPLFDNLTPLYSTMKFNFEYESHKMT
GRMLDLFAPMGKGQRGLIVAPPKTGKTELLKELAHAISKNHPEVTLMVLLIDERPEEVTD
MQRSVKGEVYSSTFDLPAQNHVRVAEIVIEKAKRLVEMKKDVVILLDSITRLARAYNTVT
PSSGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIVSTALIETGSKMDEVIFEEFKGT
GNSEVVLSRNAANKRVYPALDIIKSGTRKEELLLSPDILQKTWILRNAISQMDEVEALKF
LYSKMQKTKNNDEFFASMNE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaagagtctaaagaagaactaaaatcaaaaactacaaaaaagacaagaacacatatt
cctgttgatggttataaaatagagcaattaagagagttacctatagagactcttttagat
attgcaaatgatttggatgttgaaaatcctcaagagctaaaaagacaagatttaatgttt
atgatacttgcatctcaaatagatgctggtggatttattttatttactggaattttagag
ataaaagagggtggatttggatttttaagagcaatagatggaaacttttctgatacatca
aatgattcttatgtaagtgctactcaaattagaaagtttgcattaagaactggagatatt
gtaacaggacaagtacgacctccaaataaagatagtgaaaagtataatgctctacttaaa
attgaagcaataaactatctacctgtaaaagattcaaaaaatagaccactttttgataac
ttaactccactttattcaactatgaaatttaattttgaatatgaatcacacaaaatgaca
ggaagaatgcttgatttgtttgctccaatgggaaaagggcaaagaggattaattgttgcc
ccaccaaaaactggtaaaacagaacttctaaaagagttggcacatgcaataagtaaaaat
catccagaagttactttaatggttctattaattgatgaaagacctgaagaggtaacagat
atgcaaagaagtgtaaaaggagaggtttatagttctacttttgatttacctgcacaaaat
catgtaagagttgctgagattgttattgaaaaagcaaaaagacttgttgagatgaaaaag
gatgtcgtaattttactagattctattacaagattagcaagagcttataatactgtaact
ccaagttcagggaaagttctttcaggtggagttgatgcaaatgcacttcataagccaaaa
agattttttggagcagctagaaatattgaagaaggtggaagtttaactattgtatcaact
gctttaattgaaactggttcaaaaatggatgaagttatttttgaagagtttaaaggaaca
ggaaatagtgaagtagttttaagtagaaatgctgcaaataaaagagtttatcctgctctt
gatattattaaatcaggtacacgaaaagaagaacttcttttatctcctgatatcttacaa
aaaacatggattttaagaaatgcaatttctcaaatggatgaagttgaagctcttaaattt
ctctactcaaaaatgcaaaaaacaaaaaataatgatgaattttttgcttctatgaatgaa
taa
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