Aliarcobacter faecis: AFAEC_2208
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Entry
AFAEC_2208 CDS
T06664
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
afc
Aliarcobacter faecis
Pathway
afc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFAEC_2208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afc03019
]
AFAEC_2208
Messenger RNA biogenesis [BR:
afc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AFAEC_2208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
MupG_C
Motif
Other DBs
NCBI-ProteinID:
QKF74351
LinkDB
All DBs
Position
2206824..2208785
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AA seq
653 aa
AA seq
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MEEIIKDENKQENKTDYKQNREVKENQEAREDNQENNTSFEQNTNKKPPFKKRKPKPKFI
NKDIPTNGEGWTNDLKRAYIVNEKIHKDRLNPHYKLNLNTNAKIRITPLGGLNEIGGNMM
VVETENEAIIVDVGMSFPDGEMHGVDILIPDFSYLRDIKEKIVAVIITHGHEDHIGAMPY
LYKEMQFPIYGTSLPLEMIGSKFDEHKMREHRSLFRAISKRTPIKIGNDFEIEWMHITHS
IIDSSAIAIKTAAGTMIHTGDFKIDHTPIDGFPTDLHRLAHYGEEGVLVLTSDSTNSHSP
GFTKTEKAVGPTFERIFSTTQGRVIMSTFSSNIHRVAQAIEKALKYGRKICVIGRSMEKN
LEIAMSLGYIKFPRDQFIEAHEVGKYNDKEILIVTTGSQGESMSALYRMAIHEHRHIKIK
PEDQIILSSKAIPGNEGSVSEIINHLLKAGAKVAYQDYADIHVSGHAAQEEQKLMLRLIK
PKFFLPVHGEYNHALKHGETGVDCGVLERNVYVMADGEQIEVSPKYLKKVKTVKSGKVYI
DNQLNNKISDDVVIDRQTMAKEGIVMIVAQINENDRTLAGKPKVASFGFISDKQDRFFTN
EIEELLNTFLLNAKPGIFKNSRILEDELRKVVRKHCVRKYKKYPMIVPTIFVQ
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggaagagataattaaagacgagaataaacaggaaaataaaacagactataaacaaaat
agagaagttaaagaaaaccaagaggctagagaagataatcaagaaaataatacttctttt
gaacaaaatacaaataaaaaacctcctttcaaaaaaagaaaacccaaaccaaaatttatc
aataaagatattcctacaaatggtgaaggatggacaaatgatcttaaaagagcttatatt
gtaaatgaaaaaattcataaagatagattaaatcctcattataaattaaacttaaataca
aatgccaaaattagaattacacctcttggtgggctaaatgaaattggtggaaatatgatg
gttgttgaaactgaaaatgaagcaatcatagtagatgttggtatgagcttccctgatgga
gagatgcatggagttgatattttaatcccagatttctcatatcttagagatattaaagag
aaaattgtagcagtaatcatcactcatggacatgaagatcatataggtgcaatgccatat
ttatataaagagatgcaattcccaatttatggaacatcattacctttagagatgattggt
tcaaaatttgatgaacataaaatgagagaacatagatctttatttagagcaatttcaaaa
agaactccaattaaaataggaaatgattttgaaatagagtggatgcatattactcactca
attattgactcatctgcaattgctattaagacggctgctggaactatgattcatacagga
gattttaaaatcgaccatactccaattgatggttttccaacagatttacatagacttgct
cattatggagaagagggcgttttagttttaacttctgattcaacaaattctcactcacct
gggtttacgaaaacagaaaaagcagtaggtccgacttttgaaagaattttttcaacaact
caaggaagagttattatgagtacattctcatcaaatattcacagagttgctcaagcaatt
gaaaaagctttaaaatatggaagaaaaatctgtgttattggtagatctatggagaaaaac
ttagaaattgctatgagtttaggttatatcaaattcccaagagatcaatttattgaagct
cacgaagttggtaaatataatgataaagagattttaattgtaacaacaggaagtcaaggc
gaatctatgagtgctttatatagaatggcaattcatgaacatagacatatcaaaattaaa
cctgaagatcaaattatcttatcttcaaaagcaattcctggaaatgaaggaagtgtttct
gaaattataaaccatcttttaaaagcaggggcaaaagttgcatatcaagattatgcagat
attcatgtatctggacatgctgctcaagaagaacaaaaactgatgctaagattaattaag
cctaaattcttcttgccagttcatggagagtataatcatgctttaaaacatggtgaaact
ggtgtagactgtggagttttagagagaaatgtttatgtaatggcagatggagaacaaatt
gaagtatctccaaaatatcttaaaaaagtaaaaactgtaaaaagtggaaaagtttacata
gataatcaactaaataataaaatctctgatgatgtagttatagatagacaaactatggca
aaagagggtattgttatgattgttgctcaaataaatgagaatgatagaacattagcagga
aaaccaaaagttgcttcatttggatttatatctgataaacaagatagattctttacaaat
gagatagaagaacttttaaatactttccttttaaatgcgaaacctggaatatttaagaat
agtagaattttagaagatgagttaagaaaagttgtaagaaaacattgtgtaagaaaatat
aaaaaatacccaatgattgttcctactatatttgttcaatag
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