Aliarcobacter faecis: AFAEC_2218
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Entry
AFAEC_2218 CDS
T06664
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afc
Aliarcobacter faecis
Pathway
afc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFAEC_2218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afc03019
]
AFAEC_2218
03009 Ribosome biogenesis [BR:
afc03009
]
AFAEC_2218
Enzymes [BR:
afc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFAEC_2218
Messenger RNA biogenesis [BR:
afc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFAEC_2218
Ribosome biogenesis [BR:
afc03009
]
Prokaryotic type
rRNA helicases
AFAEC_2218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QKF74361
LinkDB
All DBs
Position
complement(2218694..2220226)
Genome browser
AA seq
510 aa
AA seq
DB search
MTFKDFNFKELLQKAIDEAGFKEPSPIQIEAIPYVLDGKDIVGQAHTGTGKTAAFGLPIL
NKLGKKAGEALVIVPTRELAMQVSDEIYRFGKHLGVNTATVYGGQSYTRQIKLLENSNVI
VATPGRLLDLLRNEQIKIKPNFVVLDEADEMLDMGFLDDIKDIFTYLPENRQTLLFSATM
PVAIKNLAKTILKEPEFVTITQANVTNINITQTFYVVDERERDDALIRLFDYKNPKKSII
FCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIKAFKSSKLEVLIATDVAARGLD
VNDVTHVFNYHLPFDGESYVHRIGRTGRAGKDGMAISIVTPHEFRTLQRIEKTIGAKLES
KIVPNISTVKQKKIDELKQTILDQEVKDYAITIVEELKEEFDISTIAFKLASIIASKTYV
KGNNNIGKSEIDIKKLLEMISKGDRGDDRSGSRNRNGRRNNFRRDKRGADRTERSSRDDS
TGSRSRQRPSNSSKTNTDKPARAQRARRQD
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
gtgacttttaaagattttaattttaaagagcttctacaaaaagcgatagacgaagctgga
tttaaagagccaagtccaatacaaattgaagcaattccatatgtgctagatggaaaagat
attgttggtcaagcacatacaggaactggtaaaacagcagcatttggtttaccaatttta
aataaattaggaaaaaaagctggagaggctttagttatagttccaactagagagcttgca
atgcaagtatcagatgaaatttatagatttggaaaacatttaggagtaaatacagcaaca
gtttatggtggacaatcatatacaagacagataaaacttcttgaaaattcaaatgtaatt
gtagcaactccaggaagacttcttgatttattaagaaatgaacaaataaaaattaaacca
aattttgtagttttagatgaagcagatgagatgcttgatatgggatttttagatgatatt
aaagatatttttacatatcttccagaaaatagacaaactttacttttctcagcaacaatg
ccagtagctattaaaaatttagcaaaaactattttaaaagagccagaatttgtaacaatt
acacaagctaatgtaacaaatataaatatcactcaaacattttatgtagttgatgagaga
gaaagagatgatgcactaataagactttttgattataaaaatccaaaaaaatctataatt
ttttgtagaacaaaaaaagatgttgatagattatcaacttttttagtatctcagggattt
atggcaaaagcacttcatggtgatatggaacaaaaacaaagagaagaggctataaaagct
tttaaatcttcaaaacttgaagttttaatagcaacagatgtagctgcaagaggacttgat
gtaaatgatgtaacacatgtatttaactatcatttaccttttgatggagagtcttatgtt
catagaattggaagaacaggaagagctggaaaagatgggatggctatttctatagtaaca
cctcatgaatttagaactcttcagagaattgaaaaaacaattggagcaaaacttgaatca
aaaattgttccaaatatttcaactgttaaacaaaagaaaatagatgaacttaaacagaca
atattagaccaagaagtaaaagactatgcaataactattgttgaagagttaaaagaagag
tttgatatttctacaattgcatttaaattagcttcaattattgcttctaaaacttatgtt
aaaggaaataataatattggaaaaagtgaaattgatatcaaaaaacttttagagatgatt
tctaaaggggatagaggtgatgatagaagtggctctagaaatcgaaatggaagaagaaac
aattttagaagagataaaagaggagcagatagaactgaaagaagtagtagagatgattct
acaggttcaagatcaagacaaagaccttcaaatagttctaaaactaatacagataaacca
gctagagctcaaagagctagaagacaagattaa
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