Alistipes finegoldii: Alfi_0362
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Entry
Alfi_0362 CDS
T02133
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afd
Alistipes finegoldii
Pathway
afd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alfi_0362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afd03019
]
Alfi_0362
Enzymes [BR:
afd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Alfi_0362
Messenger RNA biogenesis [BR:
afd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alfi_0362
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFL76762
UniProt:
I3YIE4
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All DBs
Position
404725..406146
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AA seq
473 aa
AA seq
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MTFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPIL
QLLSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDA
LQRGIDLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKER
QTLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLLR
ERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLIA
TDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDIQ
KLTGLVLDPDSGRLTPGMQTDTKSPRKQESSQRSAPKQAAQGGDGRTPAGQSGDAKGPRR
RRRNAPKREGQAQSAHAPQPQNGGGQASENREPGRRRPHRRRRSDRKSEGQRP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgacattcaaggaactgaacctcatagaacccatcatgcacgccgtagccgagaagggc
tacgtcacccccacgcccattcaggagcaggccattccgcccgcactcgaaggacgcgac
ctgatgggctgcgcccagacaggaacgggcaagacggcggccttcacgctgccgatcctg
cagctgctctcggcccggccccgcaccaaaggacgccgccccatcaaggcgctggtgctc
acgcccacgcgcgaactggcgatccagatcgacgagtgctgccgcgactatgcccgctac
accgacctgcgccactgcgtgatcttcggcggtgtcaaccagcgtccgcaggtggacgcc
ctgcagcgcggcatcgacctgctggtcgccacgccgggccgcctgctcgacctgatcgga
cagggatacgtctcgctctccgacatccgcttcttcgtgctcgacgaagccgaccggatg
ctcgacatgggtttcatccacgacatcaaacggatacttccgctgctgcccaaagagcgg
cagacgctcttcttttcggcgacgatgccctcggacatcgtcacgctggccaattcgatg
ctccacgacccggtgcacgtcaccgtcactcctccggcgtcggtcgtcgagacgatcagc
caaagcgtcatgttcgccgagaaggccgagaaaaaagacctgctcatcagcctgctgcgc
gaacggtccgaaggctcggtgctggttttctcgcgcaccaagcacggcgcggaccgcatc
gcccgcatcctcaccaaagcgggcatcgaggggcgcgccatccatggcgacaagtcgcag
ggggcccgcgaacgggccatgaacgatttccgggcgggccgctgccgcgtactgatcgcc
accgacatcgccgcgcgggggatcgacatcagcgaactgccgctggtcatcaattacgac
ctgccggaagtggccgaaacctatgtacaccgcatcggacgcacgggacgcgccgggcac
gacggcacggcgatagccttttgctcggaagacgaacgcccgctgctgaaagacatccag
aaactgaccggacttgtcctcgatcccgattccggacgcctcacgccgggcatgcagacc
gacacgaaatccccgcggaaacaggaatcctcccaacggagtgcaccgaagcaggccgcg
cagggcggcgacggccggacgccggccggacaaagcggagatgcaaaagggccgcgccga
cgcaggcgaaacgccccgaaacgggaaggacaggcccagagcgcacacgcgccgcaaccg
caaaacggcggaggacaagcgtccgaaaaccgcgaaccgggccgccgcaggccgcaccgc
cgcagacgcagcgaccggaaatccgaagggcagcgtccctga
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