Alistipes finegoldii: Alfi_0629
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Entry
Alfi_0629 CDS
T02133
Name
(GenBank) RNA polymerase sigma-70 factor, Bacteroides expansion family 1
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
afd
Alistipes finegoldii
Pathway
afd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
afd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Alfi_0629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afd03021
]
Alfi_0629
Transcription machinery [BR:
afd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Alfi_0629
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
GerE
HTH_38
HTH_23
HTH_24
HTH_10
HTH_11
HTH_40
PF0610-like_N
HTH_20
PhyR_sigma-like
HTH_29
TnsD
DUF722
HTH_Crp_2
HTH_28
DUF8604
Xre-like-HTH
HTH_5
UBA_SIK3
HTH_30
Motif
Other DBs
NCBI-ProteinID:
AFL77016
LinkDB
All DBs
Position
712124..712678
Genome browser
AA seq
184 aa
AA seq
DB search
MDKQPDELILQSLRQGSYDAFDALYMRYAPHVEAFAFCMLKNRSEAEDLAHDIFLKIWET
RESIGRIKSFRSYLFRMTKNAVFDIFEHKSVQTRYEQRLLHVEDLLTDDISTKVATEDLL
MIIDMAVEQMPEQRQRVFRLSRYEGLSHQQIAQKLGVTPKTVEYHIRTALAELKKIIGVI
AFFF
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcaaccggacgaattgatcttgcagagcctccggcagggcagttacgatgca
ttcgatgcgttgtacatgcgttacgccccgcatgtggaggcgtttgccttctgcatgctg
aaaaaccggagcgaagccgaggatctggcgcacgatatctttctgaaaatctgggaaacc
cgcgagtcgatcggccgcatcaaatcgttccgcagctatctgttccggatgaccaagaac
gccgttttcgacatcttcgaacacaagagcgtgcaaacccgttacgaacagcggctcctg
cacgtcgaggaccttctgacggacgacatttcgacgaaggtcgccaccgaggacctgctg
atgattatcgacatggccgtggagcagatgcctgagcagcggcagcgggtcttccgcctg
agccgctacgaagggctttcccatcagcaaatcgcacaaaaactgggcgtaacccccaaa
accgtcgagtatcacatccgcacggcgctcgccgaactgaaaaaaatcatcggcgtcatc
gccttcttcttctga
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