Alistipes finegoldii: Alfi_2381
Help
Entry
Alfi_2381 CDS
T02133
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afd
Alistipes finegoldii
Pathway
afd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Alfi_2381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afd03400
]
Alfi_2381
Enzymes [BR:
afd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Alfi_2381
DNA repair and recombination proteins [BR:
afd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Alfi_2381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFL78659
UniProt:
I3YNU1
LinkDB
All DBs
Position
2679652..2682978
Genome browser
AA seq
1108 aa
AA seq
DB search
MTAREQLAQFAAGSKALPRLCREYKKERATVHLKELVGGALSFYAAAAAAKTGGVHVFVA
EDRDAAAYLMNDFYNLLDEKQVYFFPSSYKRSVAYGAEDAQGVVQRTAAMSAVKGFTKGY
LIVCTYPEALVERVADAETLRRDTIAVKVGDSISIAVLEDALVDANFTRVDFVYEPGQYS
VRGGIVDVFSFSESKPYRIDFFGDEVDSIRRFNISSQLSADKLDRVEIIPNLNAGDGAAK
VSFVQFAGDAAAYWFYDADYVLRRVNDIRRKTLADMERPEEIDRLMTSRNALLGDLANCR
MLALRDNLPERPATAAVEFDTAPQPKFNKNFEMLADDMIRNSLRGYTTYILSENKVQVER
LENIFHQIGRGQAVVRPLSVTLHEGFVDNDLKLCLYTDHQIFDRYQRYRINGEIRRDEQM
TVAELNQLRPGDYVVHIDHGVGRFDGLVKINENGKAHEAIKLVYKDGDVLFVNVHSLHRI
SRYKSGDGEPPKVYKLGNGAWQKLKNATKKAVKDISRELIALYAKRKASKGFAFTPDSYL
QHELEASFQWEDTPDQQTTVAAVKKDMESDQPMDRLVCGDVGFGKTEVAIRAAFKAAVDG
KQVAVLVPTTILALQHYRSFSERLRNFPVRVEYLNRTKTAKEVSQIRADLEAGRIDILIG
THKILGKQIVFRDLGLLIIDEEQKFGVAAKEKLTQLAVNVDTLTLTATPIPRTLQFSLMG
SRDLSVISTPPPNRQPIVTESHVFSEEIIRDAVETELARGGQVYFVHNRVEDLMTMQGLI
TRICPKARVGVGHGKMPAEKLERLIMDFIYGEFDVLVATTIVENGIDIPNANTIIVNNAQ
NFGLSDLHQLRGRVGRSNQKAYCYLLSPPDELLSSDARRRLRAIEEFSDLGSGFNIAMQD
LDIRGAGNLLGAEQSGFIADIGFETYQKIMNEAIAELRAEGLHVAGLNDSEQEVVEQLRY
IDDAHIEIEVEAGLPDSYVAQQAERLKLYRELDSTKDEEALLAFGERLADRFGPLPRETE
ELLNVVRLRWEAIRLGMERVKVKNGLMIVHFVGEQDSPYYKSDTFMDLLRKVTQNPGRFV
LKQHNNRLAMTVRNVKDIEDAYKTLQQL
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgactgcccgcgagcagctggcgcagttcgccgccgggtcgaaagccctgccccgcctg
tgccgcgaatataagaaagagcgcgcaaccgtccatctgaaagagctggtcggcggcgct
ctttcgttctatgccgctgccgctgcggcgaaaaccgggggcgtacacgtcttcgtcgcc
gaggaccgcgacgctgcggcctacctgatgaacgacttctataacctgctggacgagaag
caggtctatttcttcccctcctcctacaagcgttcggtggcctacggcgccgaagatgcg
cagggcgtggtgcagcgcacggcggcgatgagcgccgtgaagggcttcacgaaagggtat
ctgatcgtctgcacctatcccgaagcgctggtcgagcgggtcgccgacgccgaaaccctc
cggcgggacacgatcgccgtgaaagtcggcgacagtatctcgatcgccgtgctggaggac
gcgctcgtcgatgcgaacttcacccgcgtcgatttcgtctatgagccgggccagtattcg
gtgcgcggcggtatcgtggacgtcttctccttctcggaaagcaaaccctaccgtatcgac
tttttcggcgacgaggtggactcgatccgccgtttcaacatttcgagccagctctcggcc
gacaaactcgaccgggtggagatcattcccaacctcaatgccggcgatggggcggcgaag
gtgtcgttcgtgcagtttgcgggcgacgcggcggcctattggttctacgacgccgattac
gtgctgcgtcgggtgaacgatatccgccgcaagacgcttgccgacatggaacgtcctgag
gagatcgaccgcctgatgaccagccgtaacgcactgctcggcgatttggcgaactgccgg
atgctcgccctgcgcgacaacctgccggagcgtcccgccacggcggccgtagagttcgat
acggctccccagcctaagttcaacaagaatttcgagatgctggccgacgacatgatccgc
aattcgctgcgcgggtacacgacctatatcctctcggaaaacaaggtgcaggtcgagcgt
ctcgaaaacatctttcaccagatcggacgcgggcaggccgtcgtgcggcccctttcggtg
acgctgcacgagggtttcgtggacaacgacctgaagttgtgcctctataccgatcatcag
attttcgaccgctaccagcgttaccgcatcaacggcgagatcaggcgcgacgaacagatg
accgtcgccgagctgaaccagctgcggccgggcgactatgtggtgcatatcgaccacggc
gtgggccgcttcgacgggcttgtgaagatcaacgaaaacggcaaggcgcacgaggcgatc
aaactggtctacaaggatggagacgtgctgttcgtgaacgtccattcgctccatcgcatt
tcgcgctacaagtcgggcgacggcgagccgccgaaggtctacaagctgggcaacggcgca
tggcagaagctcaagaacgccaccaagaaggccgtcaaggatatttcgcgcgagctgatc
gccctctatgccaaacgcaaggccagcaagggattcgcatttacgcccgacagctatctg
cagcacgagctggaggcgtcgttccagtgggaggacacgcccgaccagcagacgaccgtg
gcggccgtcaagaaggacatggagtccgaccagccgatggaccggctggtctgcggcgac
gtgggcttcggcaagaccgaggtggcgatccgcgcagcgttcaaggcggccgtggacggc
aagcaggtcgccgtgctggtgccgacgacgattctcgccctgcaacactaccgctcgttt
tcggagcgtctgcgcaacttccccgtgcgggtcgagtatctcaaccgcaccaaaacggcc
aaagaggtgtcgcagatccgcgccgacctcgaagctggccgtatcgacatcctgatcggc
acgcacaagattctgggcaaacagatcgtattccgcgatctggggctgctgattatcgac
gaggagcagaaattcggcgtggcggccaaggagaagctgacgcagctggcggtcaacgtc
gatacgctgactctcacggcgacgccgattccgcgaacgctgcaattctcgctcatgggt
tcgcgcgacctttcggtcatctcgacgccgccgcccaaccggcagccgatcgtcaccgaa
tcgcacgtcttctcggaggagatcatccgcgacgccgtcgaaacggaactcgcgcgcggc
ggacaggtctacttcgtccacaaccgcgtcgaggacctgatgaccatgcaggggcttatc
acccgcatctgccccaaggcccgcgtgggcgtggggcacggcaagatgcccgccgagaag
ctggagcggctgatcatggactttatctacggggaattcgacgtgctggtcgccacgacc
atcgtcgagaacggcattgacattcccaatgccaatacgatcatcgtgaacaatgcccag
aacttcggcctgagcgacctgcaccagctgcgcggacgtgtgggccgcagcaatcagaaa
gcctactgctacctgctttcgccgcccgacgagctgctgtcgtccgatgcgcgccgccgc
ctgcgggccatcgaggagttctccgatctgggatcgggcttcaatatcgccatgcaggac
ctcgatatccgcggcgcgggcaacctgctgggagccgagcagagcggattcatcgccgat
atcggtttcgagacctatcagaagatcatgaacgaagcgattgccgaactgcgcgccgag
ggactgcatgtcgcgggcctgaacgattcggaacaggaggtggtcgagcagctgcgctat
atcgacgacgcgcatatcgaaatcgaggtcgaagccggtcttcccgactcctatgtggcg
cagcaggccgagcgcctgaagctctaccgggagctggattcgaccaaggacgaggaggcg
ctgctggccttcggagagcgtctggcggaccgtttcggccctctgccgcgtgaaaccgag
gagctgctcaacgtggtgcgcctgcgctgggaggcgatccggctgggcatggagcgcgtg
aaggtcaagaacgggctgatgatcgtgcatttcgtcggcgagcaggactcgccctactac
aagagcgacactttcatggacctgctccgcaaggtcacgcagaatcccggcagatttgtg
ttgaaacagcacaataatcgtctggcgatgaccgttaggaatgtcaaagacattgaagac
gcatataaaacgttgcagcagctttga
DBGET
integrated database retrieval system
