Alistipes finegoldii: Alfi_3100
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Entry
Alfi_3100 CDS
T02133
Name
(GenBank) DNA polymerase III epsilon subunit-like 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
afd
Alistipes finegoldii
Pathway
afd03030
DNA replication
afd03430
Mismatch repair
afd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Alfi_3100
03430 Mismatch repair
Alfi_3100
03440 Homologous recombination
Alfi_3100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afd03032
]
Alfi_3100
03400 DNA repair and recombination proteins [BR:
afd03400
]
Alfi_3100
Enzymes [BR:
afd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Alfi_3100
DNA replication proteins [BR:
afd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Alfi_3100
DNA repair and recombination proteins [BR:
afd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Alfi_3100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
Rv2179c-like
T4_Spackle
QSregVF_b
Motif
Other DBs
NCBI-ProteinID:
AFL79341
UniProt:
I3YQS3
LinkDB
All DBs
Position
3517902..3518669
Genome browser
AA seq
255 aa
AA seq
DB search
MKLNLKRPIIFFDLETTGVDTAKDRIVEISMAKIMPDGEEIVKTRKLNPEMHIPEEATAI
HGITDEDVKDCPTFAQVAKSLEQFIRGCDFGGFNSNRFDLPVLVEEFLRAGVDVDFKRRK
FIDVQNIFHKKEQRTLVAAYKFYCDKDLDDAHSAEADTLATYEVLKAQLDRYPDLENDID
KLAEFSTRAETADYAGRILFNEKGEEVFGFGKYKGRSVEEVFRMEPSYYAWMMNGDFPLY
TKKVITEIRMREKLK
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgaagttaaacctcaagcgcccgatcatcttcttcgacctcgaaacgaccggcgtggac
accgccaaagaccgcatcgtcgagatttcgatggccaagatcatgcccgacggcgaagag
atcgtcaaaacccgcaagctcaatccggaaatgcacattccggaggaggctaccgccatc
cacggcattacggacgaggacgtcaaggattgcccgaccttcgcgcaggtcgccaaatcg
ctcgaacagtttatccgcggctgcgacttcggagggttcaattcgaaccgcttcgacctg
ccggtgctggtcgaggagttcctgcgcgcgggagtggacgtggacttcaagcgccgcaaa
ttcatcgacgtgcagaacatcttccacaagaaggagcagcgcacgctggtggcggcctac
aagttctactgcgacaaggatctggacgacgcacactcggccgaggccgacacgctggcg
acctacgaggtgctcaaggcccagctggatcgttatcccgatctggagaacgacatcgac
aagctggccgaattctcgacccgcgccgaaacggccgactacgccggacgcatcctcttc
aacgaaaaaggcgaggaggtcttcggattcggcaaatacaagggccgcagcgtggaggag
gtcttccgcatggaaccgagttattacgcatggatgatgaacggcgatttcccgctctac
accaagaaggtcatcaccgaaatccgcatgcgcgaaaaactgaaatga
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