Alistipes finegoldii: Alfi_3144
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Entry
Alfi_3144 CDS
T02133
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afd
Alistipes finegoldii
Pathway
afd03030
DNA replication
afd03430
Mismatch repair
afd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Alfi_3144
03430 Mismatch repair
Alfi_3144
03440 Homologous recombination
Alfi_3144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afd03032
]
Alfi_3144
03400 DNA repair and recombination proteins [BR:
afd03400
]
Alfi_3144
Enzymes [BR:
afd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Alfi_3144
DNA replication proteins [BR:
afd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Alfi_3144
DNA repair and recombination proteins [BR:
afd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Alfi_3144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Herpes_UL49_1
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AFL79380
UniProt:
I3YQW2
LinkDB
All DBs
Position
complement(3562898..3566554)
Genome browser
AA seq
1218 aa
AA seq
DB search
MPDFVHLHVHTQYSILDGAAAIKPLIKRAKALGMNAIAITDHGNMYGVKNFHDTATDAGV
KPILGCEVYVVKNRFEKDKDEKAGDHLILLAKNLEGYHNLCKMVSYSFTEGFYYKPRIDK
QLIEQYHEGLICCSACLGGEVPQAIMHNDIEEAERVVQWFKNIFGEDYYLELQLHPSGDP
QKDADVYENQLRVNKVILELAAKYGVKYICSNDVHFILAEDAVAHDHLICLNTGRDLDDP
NRMRYTFQEYLKSPEEMAALFPDHPEALATTLEIADKCEDYKLTHAPLMPNFPPPEDFPI
ALGELRESFVKKIEDEEMLAKIGACATVPELEELVAGDKELSDRLMVAKQYCYLKDLTYK
GAHMRYGDVLDEKTEERIKYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGPGRGSAAG
SVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRADVLRYCVQKYGQKRV
AQIVTFGTMAPKMAIKDVARVQKLALSESDRLSKLVPDKVTPDKKHGETPFDFVYKESPE
LAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLEKFAPMAIAKDAELNVV
EFEGKEVESVGLIKMDFLGLRTLSIIKDAVENVKAVHGVDVDIDGISLDDAPTYEVFARG
DTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIARKHGQEPVTYEI
ADMEEYLNDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKKRDVLDKMKPKFIEG
CKQRGHDEKICDKIWGDWEAFASYAFNKSHSTCYAYVAYQTGYLKAHYPSEFMAALLSRN
LADIKQLTLYMNECKRMGIRVLGPDINESMRTFSSNKAGDVRFGLEAVKGVGEAAVESII
AERNANGRFKDIYDLMERVNFSAVNRKCFENLAYAGGFDSISGFHRGKFFGADARDNTGV
TFIEQLMRYGQRFQAEKNNAQQSLFGGGGHVDIQRPVLPACADWSQLETLAKEREMIGHY
LSAHPLDDYKIIINHMCKTQLTELENLEALKGQEIAVAGMVVSVQNLITKTGKPWGKFVL
EDYNGTHEFALFSRDYENFRKYLFSDYFLFVRGRVQPKPYNDKELEFKIISMVQLSEMRD
TMIKEMNVLLPVEDVTPTLVRELTEKVKEAKGETLFRISVIDREAHVSLSLFSKSHKVSL
TQSLVSYLDDNEIKYSIA
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatttcgtccatctgcacgtacatacccagtattcgatcctcgacggcgccgcc
gccatcaagccgctcatcaagcgggccaaggccctcggcatgaacgccatcgccattacc
gaccacggcaacatgtacggcgtcaagaacttccacgataccgccacggacgccggggtc
aagccgattctgggctgcgaggtctacgtggtgaaaaaccgcttcgagaaggacaaggac
gagaaggccggcgaccacctgatcctgctggccaagaacctcgaaggctatcacaacctc
tgcaagatggtctcctactcgtttaccgagggattctattacaagccgcgtatcgacaag
cagctgatcgaacagtatcacgaggggctgatctgctgctcggcgtgcttgggcggcgaa
gtgccgcaggccatcatgcacaacgacatcgaggaggccgagcgcgtggtccagtggttc
aagaacatcttcggcgaagactattacctcgaactgcagctgcacccttcgggcgatccg
cagaaggacgcggacgtctacgaaaaccagctgcgcgtcaataaggtgattctggagctg
gcggccaaatacggcgtcaagtatatctgttcgaacgacgtgcacttcatcctcgccgag
gatgccgtggcgcacgaccatctgatctgtctcaatacgggccgcgatctggacgatccg
aaccgtatgcgctatacgtttcaagagtatctcaagtcgcccgaagagatggcggcgctc
ttcccggaccatcccgaagcgttggccacgacgctcgaaatcgccgacaagtgcgaggat
tacaagctgacgcacgccccgctgatgcccaacttcccgccgccggaggatttcccgatc
gccctcggcgaactgcgcgagtcgttcgtcaagaagatcgaggacgaggagatgctggcg
aagatcggcgcctgcgccaccgttccggagctggaggagctggtggccggcgacaaggag
ctttcggaccggttgatggtcgccaaacagtactgttacctcaaggacctgacctacaag
ggcgcgcacatgcgttacggcgacgtgctggacgaaaagaccgaggagcgcatcaaatac
gagctgagcacgatcgagtggatgggatttccgggctacttcctgatcgtgtgggactat
atccgcgccgcacgcgaaatgggcgtgtcggtgggacccggccgtggctcggccgccggt
tcggtggtcgcctactgtctgaagatcaccaatatcgacccgctgaaatacgacctgctg
ttcgagcgtttcctcaatcccgaacgcatctccctccccgatgtcgatgtggacttcgac
gaggacggccgcgccgacgtgctgcgctactgcgtgcagaagtacggccagaagcgcgtg
gcccagatcgtgacgttcggcacgatggcccccaagatggccatcaaggacgtcgcccgc
gtgcagaagctggccctctcggaaagcgaccgcctttcgaagctggtgcccgacaaggtc
acgcccgacaagaaacacggcgagacgccgttcgatttcgtctacaaggagtctccggag
ctggccgccgagcgcgagtcgcccaaccagctgatccgcaatacgctcaaatacgccgag
aagctggagggctcgatccgccagacgggcgtgcatgcctgcggcgtgatcatcggtcag
gacgacctcgaaaagttcgcgccgatggccattgccaaggatgccgagctgaacgtggtg
gagttcgagggcaaggaggtcgaaagcgtcggcctgatcaagatggactttctgggactg
cgcacgctgtcgatcatcaaggacgccgtggagaacgtcaaggcggtgcacggcgtcgat
gtggacatagacggcatttcgctcgacgacgcgccgacctacgaggttttcgcccgcggc
gacacgaccggcctgttccagttcgagtcccccggtatgaaaaagcacctgcgcaacctg
aagcccaaccgcttcgaggacctgatcgccatgaacgccctctaccggcccggcccgatg
gagtacattcccaacttcatcgcccgcaagcacgggcaggagccggtgacctacgagatc
gccgacatggaggagtatctgaacgacacctacggcatcacggtctatcaggagcaggtc
atgctgctgtcgcagaaactcgccggcttcacgggcggcgaggccgacacgctgcgcaag
gccatgggtaagaagaagcgcgacgtgctggacaagatgaagcccaagttcatcgagggg
tgtaagcagcgcggacatgacgagaagatctgcgacaagatctggggcgactgggaggcg
ttcgcctcctatgccttcaacaagtcgcactcgacctgctatgcctatgtcgcttaccag
accggctacctgaaggcccactacccttcggagttcatggcggccctgctgagccgaaac
ctcgcggacatcaagcagctcacgctctacatgaacgagtgcaagcgcatgggaatccgt
gtgctcggtccggacatcaacgagtcgatgcgcaccttctcgtccaacaaggcgggcgac
gtgcgcttcggtctggaggccgtgaaaggcgtcggcgaagccgccgtggagagcatcatc
gcggagcgcaacgccaacggccgtttcaaggacatatacgacctgatggagcgtgtgaac
ttctcggccgtaaaccgcaagtgtttcgagaatctggcctatgccggaggtttcgactcg
atatcgggcttccaccgcggcaagttcttcggtgcggacgcgcgcgacaatacgggcgtg
accttcatcgagcagctgatgcgttacggccagcgttttcaggccgagaagaacaacgcc
cagcagagcctcttcggcggcggcggacacgttgacatccagcgccccgtgctgcccgca
tgcgccgattggagccagctcgaaacgctcgccaaggagcgcgagatgatcggtcactac
ctctcggcgcacccgctcgacgactacaagatcatcatcaaccacatgtgcaagacccag
ctcacggagctggaaaacctcgaagcgctcaaggggcaggagatagctgtcgcgggtatg
gtcgtcagcgtgcagaacctcatcaccaagaccggcaagccgtggggcaaattcgtgctg
gaggattacaacggcacgcatgaattcgcgctgttcagcagggattacgagaatttccgc
aagtacctcttctcggattatttcctcttcgtccggggacgggtccagcccaaaccctat
aacgacaaggagctggagttcaagatcatctcgatggtgcagctctcggagatgcgcgac
acgatgatcaaggagatgaacgtgctgctgcccgtcgaggacgtaaccccgacgctggta
cgcgaattgacggagaaggtgaaggaggcaaagggcgagacccttttccgcatcagcgtg
atcgaccgcgaagcgcatgtttcgctcagtctcttctcgaagagccacaaggtgagcctg
acgcagtcgctggtttcgtatctggacgataacgagataaagtattccatcgcataa
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