Acidithiobacillus ferrooxidans ATCC 53993: Lferr_0807
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Entry
Lferr_0807 CDS
T00758
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
afe
Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lferr_0807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afe03021
]
Lferr_0807
03019 Messenger RNA biogenesis [BR:
afe03019
]
Lferr_0807
Transcription machinery [BR:
afe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Lferr_0807
Messenger RNA biogenesis [BR:
afe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Lferr_0807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
S1CSD-TOTE-2
AAA_22
OB_RNB
ATPase_2
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACH83057
LinkDB
All DBs
Position
767585..768841
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTDLKRKTAADLAVICQDMGLEGTARQKKQEIIFNILKAHARNGDAIYGEGVLEILQD
GFGFLRAASGSYMAGPDDIYVSPSQVRRFHLQTGDTVSGQIRPPKEGERYFALLKVESIN
FEAPEATRNKVNFDDLTPLFPDERLRLEYDAVPYGEMAPRIIDLVSPIGKGQRGLIVAPP
KTGKTVLLQQIAHAITANHPECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHT
QVAEIVLEKAKRLVEHKHDVVILLDSITRLARAFNTVVPSSGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEVHLDRRLAEKRTYPAINL
NKSGTRREELLVPAEMLSKMWVLRKLLAPMDPVESMEFLLDKVRSTKNNAEFFDSMNR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgacctcaaacgcaaaacggccgctgatctggcggtgatctgccaggac
atggggttggagggtaccgcccgtcagaagaaacaggaaatcattttcaatatcctcaag
gcgcacgcgcgcaatggcgacgccatttacggtgagggggtgctggaaattctgcaggat
ggatttggctttctgcgtgccgcttccgggtcttacatggcggggccggatgacatctat
gtctcgccctcacaggtgcggcgctttcacctgcagaccggagacacggtgtccggccag
attcgccctcccaaagaaggtgaacgctatttcgcgctgctcaaggtggagagcatcaat
ttcgaagcgccggaagcaacccgcaacaaagtcaattttgacgatttgacgcctttgttc
ccggacgagcgtttgcgcctggaatacgacgcggtaccttatggcgaaatggctccgcgg
atcatcgatctggtatcacccatcggcaagggccagcgcggtctgatcgtcgccccgccc
aaaaccggcaagacggtgttgttgcagcagattgcccacgccattaccgccaaccatccg
gaatgctatctgatcgtgctgctgatcgacgagcgtcctgaagaagtgacggagatgcag
cgctcggtgaagggcgaagtggtttcttccacctttgacgaaccggcgacgcgccacacc
caggttgcggaaatcgtcctggaaaaggccaagcgcctggtggagcacaagcacgatgtg
gtcatcctgctcgactccatcacccgcctggcgcgcgccttcaacaccgtagtgccgtct
tccggcaaggtgctgaccggcggcgtggatgccaatgcgctgcagaagcccaagcgcttc
tttggcgccgcacgcaacatcgaagagggcggcagcctcaccatcatcgccacggcgctg
gtggaaaccggttccaagatggacgaagtcatcttcgaagagttcaagggtacgggcaat
atggaagtacatctcgaccgtcgtctagccgagaaacgtacttacccggccatcaatctc
aataaatccggcacccgtcgtgaagaactgctggtcccggccgagatgctcagcaagatg
tgggtattgcgcaaattgctcgcgcccatggatccggtggaatccatggagtttctgctc
gacaaggtgcgcagcaccaaaaataacgcagagttctttgactccatgaaccgttaa
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