Acidithiobacillus ferrooxidans ATCC 53993: Lferr_0971
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Entry
Lferr_0971 CDS
T00758
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
afe
Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lferr_0971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afe03400
]
Lferr_0971
DNA repair and recombination proteins [BR:
afe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Lferr_0971
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Lferr_0971
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
UB2H
Kinesin
AAA_22
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ACH83217
LinkDB
All DBs
Position
944490..946517
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AA seq
675 aa
AA seq
DB search
MDKRFILESSFPPQGDQPEAIRLLVNGLAAGEYFQTLLGVTGSGKTFTMANVIAITHRPA
IIMAPNKTLAAQLYAEMRAFFPHNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIE
QMRLSATKALLERPDVIIVATVSAIYGLGDPASYHGMILHLRESSTMDQRAILKRLAEMQ
YSRNPLEMKRGTFRVNGDVIDIWPAESEDEAVRIELFGDELERISLFDPLTGKTITRLPR
YTIYPKSHYVTPRETILAALDAIKDELRARLEDLRRANKLVEAQRLEQRTRFDLEMMAEL
GYCSGIENYSRYLSGRVPGQAPPTLMDYLPKDALLFMDESHVTVPQFGGMYKGDRSRKET
LVEYGFRLPSALDNRPLTFPEFESLMPQTVFISATPGPYELEHSGQVVEQVVRPTGLVDP
AVDIRPAKGQVDDLISEINIVVRNGWRILVTTLTKRMAEDLTDYLHELGIKCRYLHSDIE
TVERVEIIRDLRAGVFDVLIGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGR
AARNLHGRAILYADSITKSMARAIAETDRRREKQLQFNAAHGITPRGIVKPVSDMIEGVY
RRNVQPAAHAAEKNADYRVLRDPQAVAKKIKELEEAMYRHARNLEFEQAAALRDDIKKLE
TRLLGTDLPVSLEED
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcgctttatcctggagagcagtttcccgccgcagggcgaccagccggaggct
atccgtctgttggtgaacggcctcgccgctggtgaatatttccagaccctgttgggggtg
accggttcgggcaagaccttcaccatggccaacgtcatcgccatcactcaccggcccgcc
atcatcatggcgcccaacaagaccctggcagcgcagctctatgcggaaatgcgcgcgttc
tttcctcacaatgccgtggagtatttcgtcagttattacgattactaccagccggaggcc
tacgttccttcctccgacaccttcattgaaaaggacgccgctatcaatgatcacatcgag
cagatgcgcctctccgccaccaaggccttgctggaacggccggatgtcatcattgtggcc
accgtttcggcgatctacggcctgggtgatcccgcctcctaccatggcatgattctgcat
ctgcgcgaatcctccaccatggatcagcgcgccatcctcaagcgtctggcggagatgcaa
tacagccgtaatcctttggaaatgaagcggggtacctttcgcgtcaacggcgatgtcatc
gatatatggcccgcggaaagtgaggacgaagccgttcggatcgagctttttggcgacgaa
ctggagcgcatctcgctcttcgatcccctgaccggcaagaccatcacccgtttgccgcgc
tacaccatctaccccaaaagccactacgtcaccccgcgcgagaccattctcgcggcgctg
gacgctatcaaagatgagcttcgcgcgcgtctggaggacctgcgccgcgccaacaagctg
gtcgaggcgcaacgactggagcagcgcacccgctttgatctggagatgatggccgagctg
gggtattgctcggggatcgagaattactcccgctacctctcgggacgagtgcccggtcag
gcaccgccgaccctgatggactacctccccaaggatgccctgctattcatggacgaatcc
catgtcacggtcccacagttcggggggatgtacaagggcgaccgttcgcgcaaggaaacg
ctggtggaatacgggttccggttaccctcggcgctggacaaccggcccttgacgtttccc
gagttcgagtcgctgatgccgcagaccgtgtttatttccgccacgcccggtccctacgaa
ctggagcactccgggcaggtggtggagcaggtggtgcggcccaccggcctggtcgatccc
gctgtggatattcgtccggcgaaagggcaggtcgatgatctgatcagtgaaatcaacatc
gttgtacgtaacggttggcgcattctggtgacgacgctgaccaagcggatggccgaagat
ctgaccgattatctgcatgagctaggcattaaatgccgttatctgcactctgatatcgaa
acggtggagcgggtggagatcattcgcgatctgcgcgccggggtgttcgacgtgctgatc
gggattaacctgttgcgggaaggcctggatatgccggaggtggcattggtcgccattctg
gatgcggataaggagggcttcctgcgctcggagcggtccctgattcagaccatcgggcgc
gccgcgcgtaatttgcatggacgggccattctctatgcggacagcatcaccaaatccatg
gctcgggccatagccgaaaccgaccgccgccgggaaaagcagttgcagttcaatgcagcg
cacggcatcaccccgcgcggcatcgtcaagccggtatcggacatgattgagggggtctat
cgccgcaatgtacaacctgccgcgcatgccgcggaaaaaaatgcggattatcgtgtgctc
cgtgatccccaagccgttgccaagaaaatcaaggaactggaggaagcgatgtaccgacac
gcccgcaacctggagtttgagcaggcagcggcgctgcgggacgacatcaaaaaactggaa
acccgccttctgggaaccgacctgccggtatctctggaggaggactga
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