Acidithiobacillus ferrooxidans ATCC 53993: Lferr_1150
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Entry
Lferr_1150 CDS
T00758
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afe
Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lferr_1150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afe03019
]
Lferr_1150
Enzymes [BR:
afe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lferr_1150
Messenger RNA biogenesis [BR:
afe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lferr_1150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
HI1480
UTP25_NTPase-like
HEM4
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACH83388
LinkDB
All DBs
Position
1120695..1121951
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AA seq
418 aa
AA seq
DB search
MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI
LHKLAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQ
MQKLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLP
KKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSH
LIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV
LVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ
DVEKLLRRSFDREIVIGFEPRQSFSGHAPSAAARRPAQAAGRGRPGSGAVPSGRARRA
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttttgaatctctgggcctttctgagcctatctggcgtgcggctgccgaacgt
ggctacaccagtcccacccctattcaggaacaggccatcccggtagtcatgtccggtgtc
gatctgctggcgggtgcacagacgggtaccggcaagactgccgcgtttgccatgcccatc
ctgcacaaactggcggttaccgcaggtagtgcgtcacgcgctccttccagtgtgcgtgcg
ctgattctggtccccacccgcgaactggcggcgcaggtggaggcgagcgtgcagttgtac
gggcgctatcttcccctgcgctccctggtgctcatcggtggggtcaagatcaatccccag
atgcagaaactgcgccgcagcgtagatatcctggtagccacccccggtcgcctgctggat
catatccagcagcgcagtgtcgacctctctcacgtcgaaattctggtgctcgacgaagcc
gatcgcatgctcgacatgggctttatccgtgacatccggcgcatccttgcggtattgccg
aaaaagcgccagaacctgctgttctcggcgacgttttcgccggaaatccgtgggctggcc
gatggcctgttgaacaacccgaccagtgttgaggtcgcggcacgcaatgccactgccgat
aatgtcgcccagcgggtttttgccgtcgatcaggaccgcaaacgcgagcttctttcccat
ctgatcgaagaacatcaatgggggcaggtgctggttttcactcgtaccaagcatggtgcc
gaccgccttgccaggcacttatcgcaggatggcatgcaggcgatggcaatccacggcgat
aagagccagggcgcccgtacccgcgccctggcggagttcaaggaaggcaaagtgcaggtc
ctggtggcgacggatatcgccgctcgcggtatcgacatcagcgagctgccccacgtggtg
aactttgaacttcctcatgtgccggaagattatgtccatcgtatcggacggaccggtcgc
gccggtaacaacggccaggccgtatcgctggtgagcagcgaggagcgtaagcagttacag
gacgtggagaagctcctgcggcgctccttcgaccgggagatcgtcatcggtttcgagccg
cggcagtctttctccggtcatgcaccgtcagcggcggcgcgtcgtccagctcaggccgca
gggcgaggtcggcccggttcaggagcggtgccttcgggtcgtgcccgccgcgcctga
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