Acidithiobacillus ferrooxidans ATCC 53993: Lferr_1177
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Entry
Lferr_1177 CDS
T00758
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afe
Acidithiobacillus ferrooxidans ATCC 53993
Pathway
afe03030
DNA replication
afe03430
Mismatch repair
afe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lferr_1177
03430 Mismatch repair
Lferr_1177
03440 Homologous recombination
Lferr_1177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afe03032
]
Lferr_1177
03400 DNA repair and recombination proteins [BR:
afe03400
]
Lferr_1177
Enzymes [BR:
afe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Lferr_1177
DNA replication proteins [BR:
afe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Lferr_1177
DNA repair and recombination proteins [BR:
afe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Lferr_1177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ACH83415
LinkDB
All DBs
Position
1147273..1150776
Genome browser
AA seq
1167 aa
AA seq
DB search
MMRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARG
QGVKPLIGSEVWVHDVAEPERPVSLVLLCMDKTGYRNLSRLLSRAYLEGSRHGRPQIDVA
WLEGSSDGLIALSAAGQGEIGRALQRHPQQAESRARYYARLFPERFYLEVQRNGEAEQEA
LVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRL
PDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQSVDEYLHDAAQKG
LQERLQELRITGDATLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGPGRG
SGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVADKYG
RDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLGMTLAKALEESEELRR
RQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLPLFNDGSEGGGNVTQLD
KDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDIQQLPLDDAATFALLKS
TETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHGKAQVT
YLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRAMGKKKPEEMAKQRSIF
LEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPQFFMSAVL
TADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHIRFGLGAIKGLGRAAIQ
AILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRASLIASVDGCMEA
AAQFQSSQASLQESLFSGQEALRVAPPLVSAEAWSLTETLRQERETLGFYLSGHPMDSLR
DDLTALGTIPLGDVAVGSTVLVAGLVVARRSTRTKRGDRIYFLTLDDGQGRLEVVVFGEV
WARAGKIREGEEPVLVLGEVGEDSYSGGLRLSALRLLDTAQAREELAAQLTLDLGLAEDM
APRDLLAVLRKYPGQTALRLRLRVADDVVAQLRVTENLSFAASPAAIAALTALAPAAHWH
WSYRPVTLLVNNVVPLERARHATRRPA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtacgccgcagttcgtccatctgcacgtacactccgaatactccctggaagac
ggaatcattccggtcaaggcgctggccagacgctgcgcggagcgaggcatgccggccgtg
gcgatcactgatcacggcaacctttttgccctggtgaaattttataatgctgcccggggg
cagggcgtcaagccattgattggcagtgaagtctgggtgcatgatgtggcagaaccggaa
cgaccggtcagccttgtcctgctgtgcatggacaaaaccggttaccgtaacctcagccgc
ctgctcagccgggcttacctggagggcagtcgccacggtcgtccgcagatcgacgtggca
tggctggaagggtcgagcgacggtctcattgccctgtctgcggcagggcagggggagatc
gggcgtgccctgcagcgccatccgcaacaggcggaaagccgggcgcgatactacgcaagg
cttttcccggagcgtttttatctggaggtgcagcgcaacggtgaggcggaacaggaggcc
ctggtccaggccacggtggcgctggcggaaaaactggatttaccgctggtggccaccaat
aacgcccactttctcgatgcggcggactttgcggctttcgacgcgcgacagtgtatttct
gcgggctttaccctggacgacccgcgccgtccacggcgttttacgccggagcaccgcctg
ccggaccccgaagaaatgcgagagcgttttgcggacctgccggaagcttgcgacaatacc
gtcgaaattgcgcgacgctgtaatatggagctggtgcttgggcattatgcgctaccggac
taccccattcccgccaaccagtccgtggatgaatatttgcacgacgcggcgcaaaaaggt
ctgcaggaacgcttgcaggagctgcgtatcaccggcgacgccacgctgccttatcacgag
cgcctgttgcgtgaggtcggcgtcattcagcagatgggcttccccggttattttctcatc
gtcgcggatttcatccagtgggcaaaaaataatggcgtgccggtaggacctggtcgtggt
tccggcgccggatcgctggtggcctacgcactacggatcaccgatctcgatcccatcggc
aatggcctgttgttcgagcgctttctcaatcccgaacgcgtttccatgcctgacttcgac
gtggatttctgcatggatcagcgtgaccgcgtcattcagtatgtggccgacaaatacggt
cgtgaccgggtcggccagatcatcacctttgggacgatgaaggcgcgggcggtggtgcgt
gatgtcggccgggtgctgggtctaccgtatggctttgtcgaccagttggccaagctggtg
ccgggtgatctgggaatgaccctggcgaaggccctggaggaatcggaggaactgcggcga
cgccaggctgaggaagacgacgtccgcgacctgctggacatcgccttgcgcctggagggt
ttgccccgtcacgcctcgacccatgcgggtggcgtggtgatctccccggagccactggcc
gaccgcctgccgctctttaacgacggctctgaaggggggggtaacgtcacccagctcgat
aaggacgatgtagaaaagatggggttggtgaagttcgactttctcggcctgcgtaccctg
accatcatcgatatggcggtcaagctcatcaatgccgatgcggcagcggcgggtcgtgcg
cccgtggatattcagcaattgcctttggacgatgcggcgactttcgccctgctcaagtcc
accgagacggcggcggtcttccaactggaatcatcgggtatgcgcgatctggtgcggcgc
ctgcagccggatacttttgaagatatcgtcgccctcgtcgccctgtttcggccggggccg
ctacagtcgggtatggtggatgatttcatcgcccgcaaacacggcaaggcgcaggtaacc
tatctgcatccggatctggcaccgattctccgggaaacctatggggtgattgtctatcag
gaacaggtcatgcagtccgcccaggcgctggcgggttattccctcggcggtgccgattta
ctgcggcgcgccatgggcaagaaaaagccggaggaaatggccaagcaacgcagcattttc
ctggagggagcccacaagaacggtttggccgcggaccaggccggggccatcttcgacctc
atggaaaagtttgcggaatatggctttaacaaatcccactcggcagcctatgccctggtg
tcctaccaaaccgcttatctgaaggcccactatccgcagttttttatgtctgccgtgctg
accgcagatatggaccacaccgacaaagttgtggcgatgattgccgagtgcgcgcgcatg
ggcctgcgcattgctccaccgagcgttcagcacagtgtgctggagttccggccggagggg
gatgatcatatccgctttggtctgggtgccatcaagggcttgggacgggcggccattcag
gcgattctcgacgcccgtagaggaggcgccttcctgaatctcttcgatctgctctgccgg
gtggatacccagaaaatcaatcgtcgtgccctggaggcattgattcgcgccggagccatg
gatgactggggcgtgtcgcgggccagcctgatcgcttccgtggacggttgtatggaagca
gcggcgcagtttcagagcagtcaggcgagcctgcaggaatcattgtttagcggacaggaa
gcgttgcgggtagcgccgccgctggtgtctgccgaggcatggagcctcaccgaaaccctg
cgtcaggaacgggaaactctgggcttctatctcagtggtcaccccatggacagtctgcgg
gatgatctgacggcgctgggaacgatacctcttggcgacgtcgcggtcgggtccacggta
ttggtggcggggttggtggtagcgcggcgcagcacccggaccaagcgcggtgatcgtatc
tatttcctgaccctcgacgatggtcaggggcggctggaggtcgtcgtctttggcgaagtc
tgggcgcgggccggcaagatccgagagggtgaggagccggtgctggttctgggtgaggtg
ggcgaggacagctattctggcggcctgcggctcagtgccctgcgtctgctggatacggca
caggcgcgtgaggaattggctgcccaattgaccttggatctgggtcttgccgaagatatg
gcgccgcgagatctgcttgccgtgctccgtaagtatcctggccaaacggccttgcgcctg
cgtttgcgggtcgcagacgacgttgtcgcgcaattgcgggtgacggaaaacctgagcttc
gcggcgagtcccgccgccattgccgccctgacggcgttggcacccgcggcgcactggcac
tggagctatcggccggtgacccttctcgtcaataatgtcgtccccctggagcgtgcacgg
cacgcgacgcgacgcccggcctga
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