KEGG   Acidithiobacillus ferrooxidans ATCC 53993: Lferr_2012
Entry
Lferr_2012        CDS       T00758                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
afe  Acidithiobacillus ferrooxidans ATCC 53993
Brite
KEGG Orthology (KO) [BR:afe00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:afe02048]
    Lferr_2012
Enzymes [BR:afe01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Lferr_2012
Prokaryotic defense system [BR:afe02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Lferr_2012
SSDB
Motif
Pfam: EcoR124_C T1R_D3-like SWI2_SNF2 ResIII HSDR_N DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: ACH84229
LinkDB
Position
complement(2012555..2015653)
AA seq 1032 aa
MKPEGRTRKQIDAPDTYSRPADSPSFAVREDTIEYGFIGTLQNLKYEYRPDIRDRAALEA
NFRQHFEALNRVRLTDAEFARLLDEIVTPDVFTAAKTLRSINAFTRDDGTPLNYSLVNLK
DWCKNTFEVIHQLRINTDYSHHRYDVILLINGVPCVQIELKTLGVHPRRAMEQIVEYKHD
PGNGYTRTLLCFMQLFIVSNRDQTYYFANNNARHFAFNADERFLPVYEFADEDNSKIRQL
DAFAERFLKKCNLGQTLSRYMVLLAGEQKLMMMRPYQVYAVQHMVKCIDEDNGNGYIWHT
TGSGKTLTSFKAATLLKENEHIHKCVFVVDRKDLDRQTREEFNRFQEGCVEENTHTGALV
RRLLSEDYADKVIVTTIQKLGLALDETSRRNKQRSKNGQATYKEQLEALQDERIVFIFDE
CHRSQFGENHKAIKAFFPRAQLFGFTGTPIFEANASLQKIEDSTASMRTTADLFQKQLHA
YTITHAIEDGNVLRFHVDYFKPEGKNPPKPGEPIAKRAVIEAILAKHDAATGGRRFNALF
ATASINDAIEYHALFKTMQAEKLAADPEFKPLNIACVFSPPAQLAENPESKKDIDQLSED
LPQEQEDNKVEPEAKKQALEGILADYNARYGTNHRLSEFDLYYQDVQKRIKDQQWPNADY
PPAQKIDITIVVDMLLTGFDSKFLNTLYVDKNLKHHGLIQAFSRTNRVLNATKPYGNILD
FRQQQDAVDAAIALFSGEKTGEQAREIWLVEKAPVVIQKLEAAVQKLDAFMQSQGLDCTP
STVANLKGDAAKTVFIERFKEVQRLKTQLDQYTDLTGENKAAIEQVLPEETLRGFKGQYL
DTAKKLRDGRNKPDKPGADKPADQLDFEFVLFASAVIDYDYIMKLMTSFSAKEPGKAKMT
REQLIGLISSDAKFINERDDIAEYIGTLQAGEGLSETAIRDGYTRFKAEKNAQELATIAA
KHNLATAALQSFVDGIFERMIFDGERLSDLMAPLDLGWKARSQAEIALMEDLYPLLTQRA
GGRDISGLSAYE
NT seq 3099 nt   +upstreamnt  +downstreamnt
atgaaaccggaaggccgcacccggaaacaaatcgacgccccagacacctacagtcggccc
gctgatagtccgagtttcgccgtccgcgaggacaccatcgaatacggcttcatcggcacc
ctgcaaaacctcaagtacgaatatcgccccgacatccgcgaccgcgccgcgctggaggcc
aatttccgccagcacttcgaagcgctcaaccgcgtccgcctcaccgatgccgagttcgcc
cgcctgctggatgagatcgtcaccccggatgtttttaccgccgccaagaccctgcgcagc
atcaatgccttcacccgcgacgacggcacgccgctgaactacagcctcgtcaacctcaag
gactggtgcaaaaacaccttcgaggtcatccaccagttgcgcatcaataccgactacagc
caccaccgctacgacgtcatcctgctcatcaacggtgtgccctgcgtgcagatcgagctg
aaaaccctcggcgtccatccgcgccgggccatggagcagatcgtcgaatacaagcacgac
cccggcaacggctacacccggacgctgctctgcttcatgcagctcttcatcgtcagcaac
cgcgaccagacttactacttcgccaacaacaacgcccgccatttcgccttcaacgccgac
gagcgctttttgcccgtctatgagttcgcggacgaggacaatagcaagatcagacagctc
gacgccttcgccgagcgcttcctgaaaaagtgtaacctcggccagaccctcagccgctac
atggtgctgctggcgggcgagcaaaagctcatgatgatgcgaccctatcaggtctatgcc
gtgcagcacatggtcaagtgcatcgatgaagacaacggcaacggctacatctggcacacc
accggcagcggcaagacgctcacctccttcaaggccgccaccctgctcaaggagaacgag
cacatccataaatgcgtgttcgttgtcgaccgcaaggacctcgaccgccagacgcgggag
gaattcaaccgcttccaggaaggctgtgtcgaagaaaacacccacaccggcgccctcgtg
cgccgcctgctgtccgaggactacgccgacaaggtcatcgtcaccaccatccagaagctc
ggcctcgcgctcgacgaaacgagccgccgcaacaagcaacgcagcaaaaacggccaggcc
acctacaaggagcagctcgaagcactgcaggacgagcgcatcgtcttcatcttcgacgaa
tgccaccgctcgcagttcggtgagaaccacaaggccatcaaagccttcttcccccgcgcc
caactcttcggcttcaccggcacgcccatcttcgaggccaatgccagcctgcagaagatc
gaggacagcacggcctccatgcgcaccacggcagacctcttccagaaacagctgcacgcc
tacaccatcacccacgccatcgaagacggcaatgtgctgcgcttccatgtcgattacttc
aagccggaaggaaagaacccacccaaacccggcgaacccatcgccaagcgcgcggtcatc
gaagccatcctcgccaagcacgatgccgccaccggcgggcgccgcttcaacgccctcttt
gccaccgcatccatcaacgatgccatcgaataccacgcgctgttcaagaccatgcaagcc
gagaaactggccgccgatcccgagttcaagccgctgaatatcgcctgcgtcttctctccg
cctgcgcagctcgcggagaatcccgaaagcaaaaaggacatcgaccagctctccgaagac
ctcccgcaagagcaggaagacaacaaggtcgagccagaagcgaagaagcaggcgcttgaa
ggcatcctcgccgactacaacgcccgctacggcaccaaccatcgcctgagcgaattcgat
ctttactaccaggatgtgcaaaagcggatcaaagaccagcagtggccgaatgccgactac
cccccggcgcagaaaatcgacatcactatcgtcgtggacatgctgctcaccggcttcgat
tccaagttcctgaacacgctctacgtggacaagaacctcaagcaccacggcctgatccag
gccttctcgcgcaccaaccgcgtgctcaacgccaccaagccctacggcaacatcctcgac
ttccgccagcagcaggatgccgtcgatgccgccatcgcgctgttctccggcgaaaagacc
ggcgagcaggcgcgcgaaatctggctggtggaaaaggcgcccgtggtcatccagaaactg
gaggccgccgtgcaaaagctcgacgccttcatgcagtcccaggggctggattgcacgccc
tccaccgtggccaacctgaaaggcgatgccgccaagaccgttttcatcgagcgcttcaag
gaagtgcagcggctcaagacccagctcgaccaatacaccgacctcaccggggaaaacaaa
gccgccatcgagcaggtgctgcccgaagaaaccctgcgcggcttcaagggccagtatctg
gacaccgccaaaaagctccgcgacgggcgcaacaagccggacaagcccggcgccgacaag
cctgccgatcagctcgacttcgagttcgtcctcttcgcctccgccgtcattgattacgac
tacatcatgaagctgatgaccagcttctcggccaaagagccgggcaaggccaagatgacc
cgcgaacaactcatcggcctcatcagcagtgacgccaagttcatcaacgagcgcgacgac
atcgccgaatatatcggcacgctccaggccggcgaggggctgagtgaaaccgccatccgc
gacggctacacccgcttcaaggcggagaagaacgcccaggaactcgccaccattgccgca
aagcacaatctggccaccgccgccctgcaaagcttcgtggacggcatttttgagcgcatg
atcttcgacggcgaacgcttgagcgacctcatggccccgctcgatctgggctggaaagcc
cgcagccaggccgaaatcgcgctgatggaagatttgtatccgctgctgacccaacgcgcc
gggggccgcgatatttcagggcttagcgcctatgagtga

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