Acidithiobacillus ferruginosus: HF292_012900
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Entry
HF292_012900 CDS
T11768
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
afer Acidithiobacillus ferruginosus
Pathway
afer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HF292_012900 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afer03400
]
HF292_012900 (recD)
Enzymes [BR:
afer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HF292_012900 (recD)
DNA repair and recombination proteins [BR:
afer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HF292_012900 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
NAT10_TcmA_helicase
AAA_22
PhoH
UvrD-helicase
SH3_13
nSTAND3
DEAD
AAA_24
SLFN-g3_helicase
ResIII
UvrD_C
Mg_chelatase
ATPase
Motif
Other DBs
NCBI-ProteinID:
XRP72677
UniProt:
A0ACD5IG72
LinkDB
All DBs
Position
2515113..2517077
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AA seq
654 aa
AA seq
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MTSSMIDQLRAWTSAGWLRPLDLAFAQFLVRLDPQAPALLPLAGALLARLEGEGHTCIAL
EDLLDAPQRFLDWPAPAHAMLATALGHWPHAAQWTETLAQSLCVQVTERNTSDPANSAET
PLVLSAARLYLRRYWRDQQFIAETLRQRAQQRVADAANPEVLRPWLEQLFPASDEPGDAL
PWQKIACALALRSHFSIITGGPGTGKTYTAARFMALLMATSSTPLRIVLAAPTGKAAVRI
DESLQSAVGTLPQLGPIPDMTAAFAHLRPARTLHSLLGARPDSRRFRHDAAHPLELDVLV
VDEASMIHQEMMAALLRALPPAARLILLGDQDQLASVEAGAVLAELSLGSGKYDAETCHY
MQASCGAAPQPGDNGHSPLAANIIRLQRSHRFNAEIGALADAVHGGHPESAVRILQTAHT
GTLAWQPAPAIHQILELAHSESAYGRVWQAAGQPPPKDQQQHSAWVKAILNDYAGFRILC
ALRQGPWGVTGINRAIEDYLLRQGILQSRGLWYAGRPTLVTRNDPNLGLSNGDIGIALPD
LDKRLRVYFPNSEDAPRAILPSRLNHTESAWAMTVHKAQGSEFAHTVLILPPEDSPVLSR
ELLYTAITRARKRFTLIAPRERLENAIRRQTRRMSGLHAALTRLERIPTGQIST
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaccagctccatgatcgaccaactccgcgcctggaccagcgccggctggctacggccc
ctcgaccttgccttcgcgcagttcctcgtccgcctggacccgcaggccccggccctcctg
cccctggcgggcgccctcctcgccaggctggagggagaaggccacacctgcatcgcgctg
gaagacctcctcgacgcgccccaacgcttcctggactggcccgcgccggcgcacgccatg
ctggcaaccgcactcggtcactggccgcatgccgcccaatggacggaaaccctcgcccag
agcctctgcgtgcaggtcaccgagcgcaacacttccgacccggcaaacagcgcagaaaca
cccctggtcctcagtgccgcccgcctctatttgcgccgctactggcgcgaccagcaattc
atcgccgagaccctgcgccagcgcgcccaacagcgcgtcgccgatgctgccaaccccgag
gtcttaagaccctggctggagcaacttttcccggcatctgacgaacccggcgatgcactc
ccctggcaaaaaatcgcctgcgccctcgccctgcgcagccacttcagcatcatcaccggc
ggccccggtaccggcaaaacctacaccgcggctcgcttcatggccttgctcatggcgacc
agcagcacacccctgcgcatcgtgcttgccgcccccaccggcaaggccgccgtgcgcatc
gacgaatccctgcagagcgcggtcggcacccttccgcaattgggcccaatacccgatatg
acggccgccttcgcccacctgcgtccggcgcgcaccctgcacagcctgctcggcgcccgc
cccgacagtcgtcgctttcgccatgacgctgcccaccccctcgaactagacgtactcgtg
gtggacgaagcctccatgattcatcaggagatgatggccgccctgctccgcgccctgccg
cctgcggcccgcctcatcctcctcggcgatcaggaccagcttgcctccgtcgaagcgggc
gcggtgctggccgaactcagtctcggcagcggtaaatacgatgccgagacctgccactat
atgcaggccagttgcggtgccgcgccgcagcccggcgacaacggccacagcccccttgcc
gcaaacatcatccgcctgcaacgcagccatcgcttcaacgcagaaatcggcgcgctggcc
gatgccgtgcatggcggccaccccgaaagcgccgtccgcatcctgcaaacggcgcacact
ggcaccctcgcctggcaacccgcccctgccatccaccagatactggaactcgcccactcg
gaaagcgcctatggtcgcgtctggcaagctgcggggcagccgccacctaaagaccagcaa
caacatagcgcatgggttaaagccatcctcaacgactacgctggcttccgcattctctgt
gccctgcgccaaggcccctggggcgttaccggcatcaaccgcgccatcgaagactacttg
ctgcgccagggcatcctgcagagccgcggcctttggtatgccggccggcccaccctcgtc
acccgcaatgatcccaaccttggtctcagcaatggcgacatcggcatcgccctgcccgac
ctggataaacgcctgcgcgtctacttccccaacagcgaagacgccccccgtgccatcctg
cccagccgcctcaaccacaccgaaagcgcctgggccatgaccgtccacaaggcacagggt
tctgagtttgcccacaccgtcctcatccttcccccggaagacagccccgtcctcagccgc
gaactgctctacacggccatcacccgcgcccgcaaacgcttcaccctcatcgccccccgc
gagcggctggaaaacgccatccggcgccagacgcggcggatgagcgggttacatgcggct
ttgaccaggctggagcgaatcccgacaggtcagatttcgacgtag
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