Acidithiobacillus ferrianus: GL267_001920
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Entry
GL267_001920 CDS
T10957
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afh Acidithiobacillus ferrianus
Pathway
afh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GL267_001920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afh03400
]
GL267_001920 (mfd)
Enzymes [BR:
afh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GL267_001920 (mfd)
DNA repair and recombination proteins [BR:
afh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GL267_001920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
XRI69466
LinkDB
All DBs
Position
complement(388136..391585)
Genome browser
AA seq
1149 aa
AA seq
DB search
MDCSLSLGIPPRAGAARAFSPFYGAADSWLAAQMARQWRRPLLVLLPTTHDVEEWQREWH
FFAPDLPAPLIFPDREILPYDRLAPPADATATRLTTLAALPEWRGVCLAPLSAVLQRLPP
RNFLDRHAFVLAVGDHLNPERFRQRLIDAGYRNVSEVSEAGELAWRGGIVDLFPSGSPLP
YRIEIFDTMVESIRAFDPETQRTLQKADRVSLLPAREVPVDTAALQEFRHQFRARFSGDP
QRAEIYRAASRGQVPQGAEHYLPLFFPESSHLLMHFPKDGVVLLPPGLDASAQHIRQDWQ
ERHEERAHDTTHPILLPDELLLTPAEWEDALRGRALVHGQREGDAERLPTAPLPDLHSRP
EAPLAALDTFLRHLPTTGRVILAAESPGRQEALSERLGKSGLLPSRVQNWPEFLAGTERI
AITVAPLERGLLIREGGLVRLALISEAQIFGDRIFAQRRSANARQRNMEGLIRDLGDLQP
GDAVTHEEYGIGRFQGMTTPFAAQGDINEYVVLEYANNDLVYVPADHLDRIARYVGNGAT
EPMLSRLGSNHWDKSKAKARQKAIDAASELLDIYARRAARSGRAFPAPDDAYWEFVSRFP
FEETPDQQAAIDAVIADMTNPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQVAVLVPT
TLLAQQHYENFRNRCAGLPLRVEVLSRFQSAKTHKQVLAAVATGRVDILIGTHRLLQKDV
AFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLRDLSIIAT
PPQRRQPVRTFVQIWDDATVIEACQRELYRGGQVYFLHNEVRDIERMATTLRRLMPDARL
RVAHGQMPEGELEAVMLDFYHQRFDILLSTTIIESGIDNPHANTILIHRADQFGLAQLHQ
LRGRVGRSHQRAYAYLFTPDPRAMSEDARRRLDAIQSLEDLGVGFALASHDLEIRGAGEL
LGEAQSGHMDEVGFTLFMEWLNDAVEAIRDGRDPHSLEERRTNGPEIHLNTPALIPDDYL
PDVHLRLQLYKRLSDVRSDSAIDEILVEMIDRFGPIPAPTRTLFCQTRLRLSALRIGIAQ
IDAGPAGARLQFVPDNQVAPEKIIQFIQQSPGIYQLDGEHRLRIRRDLPDGEARCQELLQ
LIDQLRIQP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttggattgcagtctttctctcggcatcccgccgcgcgccggggcggcgcgcgcatttagt
ccattctacggtgccgcggacagctggctggcagcgcaaatggcgcgtcagtggcggcgt
ccgctgctggttttgctgccgaccacgcacgacgtggaagaatggcaacgcgaatggcat
tttttcgcaccggacttaccagcgccgctgattttcccggaccgcgaaatccttccctat
gatcgcctggcgcctccggcggatgccacggccacccgtctgaccaccctggcggcgcta
ccggaatggcgtggcgtgtgcctcgccccgctgtccgccgtcctgcaacgcctgccgcca
cgcaacttcctcgaccgacacgcttttgtcctcgccgtgggcgaccatctcaatccagag
cgtttccgtcaacgtctgatcgacgccggctatcgcaatgtcagcgaggtttcggaggct
ggcgaactggcctggcgcggcgggatcgtcgacctctttcccagcggcagccctctgccc
taccgcatcgagatcttcgataccatggtggagagtatccgggctttcgacccggaaacc
cagcgcaccctgcaaaaggccgaccgggtatccctgcttcccgcccgggaggttccggtg
gacaccgccgcgctacaggaatttcgccaccagttccgcgcccgcttcagcggtgacccg
caacgtgccgaaatttaccgggcggccagtcgcggacaagtaccccaaggagccgagcat
tatctccccctcttcttccccgagagcagtcatctgttgatgcactttcccaaggacggg
gttgttcttctgccccctggcctggacgcctctgcccagcatattcgccaggactggcag
gagcgccacgaggagcgcgcccacgataccacgcaccccatactgctcccggacgaatta
ctcctgacccccgctgaatgggaagacgctttgcgtggccgggcgctggtgcatggacag
cgggaaggtgacgcggagcgcctgccgaccgccccgctccccgatctccatagccgtccg
gaagcgccactggccgcgctcgacacttttctgcgccatctgccgacaacaggccgggtc
atcctcgccgccgaatcgccgggacgccaggaagccttgtcagagcgattgggcaagagt
ggtctactccccagccgggttcagaactggccggaatttcttgccggcacggaacggatc
gccatcaccgtagcgcccctggaacgcggcctgctcatcagggaaggcggtctggtccga
ctggcgctgatctccgaagcgcaaatttttggtgatcgcatctttgcccaacggcgcagc
gccaacgcccgacagcgcaatatggaaggtttgatccgcgatctcggtgatctacagcct
ggcgacgccgtgacccacgaggagtatggtatcggccgttttcagggcatgaccacgcct
tttgccgcgcaaggcgacatcaacgaatatgtggtcctggagtatgccaacaacgacctc
gtctatgtcccggcggatcacctggatcgtattgcccgctacgtgggtaacggtgcgacg
gaaccgatgctctcgcgcctcggcagcaatcactgggacaagtccaaagccaaggcgcgg
cagaaagccatcgatgccgccagtgaactgctggacatctatgcccggcgcgccgcgcgc
agcggccgggccttccccgcacccgacgacgcctactgggaattcgtctctcgctttccc
tttgaagaaacccccgaccaacaggcggccattgatgccgtcatcgccgacatgaccaac
ccccatccgatggatcgcctggtctgcggcgacgtgggttttggcaaaaccgaagtagcg
ctgcgggcggcttttctggcggcacacagcggggcacaagtggcggttttagtgccgacc
acgctcctcgcccagcagcattacgaaaacttccggaatcgctgcgccggactgccgcta
cgcgtggaggtgctctcccgtttccagagcgccaagacgcacaagcaggtactcgccgcc
gtggccaccgggagagtggatatcctcatcggcacccatcgtctactgcaaaaggatgtc
gcttttcacgatctggggttgctgattctggatgaggagcatcgcttcggagttcggcag
aaggagcggatcaaagccctgcgggccgaggtggatatcctcaccctcaccgccaccccc
atcccacgcaccctgaacctgtccctcgccggtctgcgagatctctccatcatcgctacg
ccgccccaacgccgtcaaccagtgcgcaccttcgtccagatctgggatgatgcgaccgtg
atcgaggcctgccagcgcgaattgtatcgcggcggtcaagtgtatttcctgcacaacgag
gtacgcgacattgagcgcatggccaccaccctgcgccgcctgatgcccgatgcccgcctg
cgcgtcgcccatggccagatgcccgagggcgagttggaggcggtgatgctggatttttat
caccaacgcttcgacattctcctcagcaccaccatcatcgaatccggcatcgataacccg
cacgccaacaccatcctcatccaccgcgcggaccaattcggtctcgcccaattgcaccag
ttacgcggccgagtgggccgctcgcaccaacgtgcctacgcctatctgttcactccggac
ccacgcgccatgagcgaagatgcccgccgtcgtctcgacgccatccaatccctggaagat
ctcggtgtcggctttgccctggccagccacgatctggaaatccgcggggcgggtgagttg
ctcggcgaggcgcaaagcgggcacatggatgaagtgggtttcaccctctttatggaatgg
ctgaacgacgcggtggaggccattcgtgacggacgcgatccccacagtctcgaagaacgg
cgcaccaatggtccggaaattcatctcaacaccccggcgctcattcctgacgactacttg
ccggacgtacacctgcgcctgcaactctacaagcgcctcagtgacgtgcgcagtgattcc
gccattgatgagatcctggtggagatgatcgaccgcttcggacccattcccgcgccgacc
cgcaccctgttctgccagactcggttacgcttgagcgccctccggatcggcatcgcccag
atcgacgcgggtcccgctggtgctcgtctgcaattcgtccccgacaaccaggtagccccc
gaaaaaatcatccagttcatccagcagtcccccggcatttaccaactggatggagaacac
cgcctgcgcattcgccgcgatctccccgatggcgaagcgcgctgtcaggaattactgcaa
ctcatcgaccaactgaggatccaaccatga
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