Acidithiobacillus ferrianus: GL267_010445
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Entry
GL267_010445 CDS
T10957
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afh Acidithiobacillus ferrianus
Pathway
afh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL267_010445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afh03019
]
GL267_010445
03009 Ribosome biogenesis [BR:
afh03009
]
GL267_010445
Enzymes [BR:
afh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GL267_010445
Messenger RNA biogenesis [BR:
afh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GL267_010445
Ribosome biogenesis [BR:
afh03009
]
Prokaryotic type
rRNA helicases
GL267_010445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
XRI68173
LinkDB
All DBs
Position
complement(2082816..2084669)
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AA seq
617 aa
AA seq
DB search
MSQESGLRFIDFALAEPIKKAVTEIGYEQPSPIQAQSIPPLLGGRDVIGLAQTGTGKTAA
FALPLLSRVDLSLRVPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQL
KQLQRGVQVVVGTPGRIQDHLRRKTLRLDQLQAVVLDEADEMLRMGFIDAVEDILQHTPD
GRQVALFSATMPDAIRRIAKTYLRDPLEIRIKTATTTVAAIRQRYWQVSGTHKLDALTRI
LEVEDSNAWLVFVRTKTATVELAERLEARGYACGALNGDLSQALREQTIERLKSGILDIV
VATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPRERHLLRA
IERATGQTITAMHLPSIEDVADRRMSQFKDQLTEVLNGQDLSVFESLIADYQRENDVGLG
EIAAALAYMVQKERPLVPVESEMTKPMRGDSAGMGHPPSRHRSEEARGARPSRSGSGRGD
EVSMCRFRLDVGENHGAQIKNIVGAIANEAGIPSRNIRKVEIHAEHSTVELPANLQPSIL
QHLQRVWVSGRPLQITPAEGTVSAARTPVRPRPTAVREEPHAPRKILSIKSVKGEHEYKS
KERGAGAVKRKRPARGS
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagagtccggtcttcgttttattgattttgcccttgctgaaccgatcaagaag
gcggtgacagaaatcggctacgaacagccatcgcctattcaggcgcagagtatcccgccg
ttgttgggggggcgggatgtcatcggcttggcgcagactggtacaggcaagacggcagct
ttcgccttgcctctcttgagccgggtggatctcagtctgcgcgtgccacagttgctggtg
ctggcgccgacccgagagttggccattcaggtggctgaggctatgcagagttatgccaag
ttccttcccggattccatgtcttgcccatctatggtggtcagtccatgggtttgcaactc
aagcagcttcagcgtggtgtgcaggtggtggtgggtactccgggacgaattcaggatcac
ttgcgccgtaaaaccttacgtcttgatcaattgcaggccgtggtactggacgaggccgac
gaaatgctgcgcatgggctttattgacgcagtggaagatatcctccagcacacaccggat
ggtcgtcaggtggctctcttctccgcaaccatgcccgatgccattcgccgcatcgccaaa
acctatctgcgcgatcccctggaaatccgcatcaaaaccgcgacgacgacagtggctgct
attcgtcaacggtattggcaggttagtggtacccataagctggatgcgcttactcgcatc
cttgaagtggaggacagcaacgcttggcttgtctttgtgcgcaccaaaacagcgacggtg
gagttggcggagcgactggaggcgcgcggttacgcctgcggtgccctcaatggtgatttg
agtcaggcactgcgggagcagaccatagagcgtctcaagagtggaatcctggatatcgtg
gtcgcgacggatgtggcggcccgtggtttggatgtcgaacgaatcacgcacgtgattaac
tacgacatccccaatgatacggaagcctatgtccaccgtatcggccgtactggacgtgcc
ggccgtaagggggaggcgattctcttcgtcgcgcctcgcgaacgccatcttttgcgcgct
atcgaacgggcgacggggcaaaccattaccgcgatgcatttgcctagtatcgaagatgtc
gccgaccggcgaatgagtcaattcaaagaccagttgaccgaggtattgaatggccaggac
ttgtcggtctttgaatccctgattgcagactatcagcgagaaaatgatgtgggtttaggg
gaaatcgcggcggcactcgcctacatggtgcaaaaggagcgtcccttggttccggttgaa
tccgagatgaccaaacccatgcgaggcgattcggctgggatgggccatccgccatcacgg
caccgctccgaagaagcgcggggtgcgcgaccgtcgcgtagcggatcggggaggggagat
gaggtgtcgatgtgtcgttttcgtctggacgtgggtgaaaaccacggtgcgcaaatcaaa
aatattgtgggagccattgccaatgaagctggcattcccagtcgcaatatccgtaaggtg
gagattcatgcggagcatagcactgtggagctccccgcgaatctacagccttccatatta
caacatttgcagagagtctgggtttctggccggcctttgcaaattacgccggcggagggc
accgtgtcggcggcgcgcacgccggtcaggccacgcccgactgccgtcagagaggagccg
catgcaccgcgcaagatactctccatcaaatcggtgaaaggcgagcatgagtacaagtcc
aaggaacgtggcgcgggcgcggtgaaacggaaaaggcctgcgcgcgggagttga
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