Acidithiobacillus ferrianus: GL267_011055
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Entry
GL267_011055 CDS
T10957
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
afh Acidithiobacillus ferrianus
Pathway
afh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL267_011055 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afh03019
]
GL267_011055 (rnr)
03016 Transfer RNA biogenesis [BR:
afh03016
]
GL267_011055 (rnr)
Enzymes [BR:
afh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GL267_011055 (rnr)
Messenger RNA biogenesis [BR:
afh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GL267_011055 (rnr)
Transfer RNA biogenesis [BR:
afh03016
]
Prokaryotic type
tRNA degradation factors
GL267_011055 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rrp44_S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
XRI68288
LinkDB
All DBs
Position
complement(2216230..2218470)
Genome browser
AA seq
746 aa
AA seq
DB search
MPETQEPTSLSERDPMFEREKERYERPIVSREYLLNHLEGAGKPLTLEDLIVDLDVVEED
QEALRRRLRAMERDGQLVCNRRGAYGLVGAMELVRGTVSAHPDGFGFLIPEAGGKDLFLS
PREMRKVFHGDTLLGRAIGEDRRGRVEGTVVRILERALQQIVGRYYAEGGVHYVIPEDRR
IPQEFGVVEGGTLVPVHGQIVILEITQYPDGRNMPQGRVIEILGEHMAPGMEVEIAVRNY
GLPYQWPEAVEREITVFSESVPDSMKAGRRDLRDLPLVTIDGADAKDFDDAVYAEEIENG
FRLIVAIADVATYVRPDSALDKEAVTRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLC
MLCEMEMDETGEVQRFRFARGIMRSQRRFTYDEVAAILAGDEDARARDAVLIPHLEALHR
LYESLSKARARRGTIEFDSQESRIIYNEQARIEKIVAVTRNVAHRIIEECMLAANVCAAQ
YFRIHDLPMLYRVHPEPSSDKLEDLRRFLSELGVPVRLPVHPRSADLAKIIEDTRERSDS
SLIQTVILRSLSQAYYTADTGMHFGLAFPAYTHFTSPIRRYPDLVVHRGIHALLDAADTD
PVWLPKKELQELSQHCSMTERRADEASREAVNWLKCEFMMDKVGETYVGIITGVTGFGLF
VALREIYVEGLIHISTLGEDYFHFDAQHYRIVGDRSKETFQLGDEIEIKVMNVNLDERKI
DFERVPKGGQVRGAAKSRRSRRGRKD
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaacacaagaacccacctcactgagtgagcgtgatcccatgttcgagcgggaa
aaagaaagatatgaacgacccattgtcagtagggagtacctgctcaatcatctggagggg
gcgggtaagccgctcactctggaagaccttatcgttgatctggacgtggttgaagaagat
caggaagcgctccggcgtcgcttgcgggccatggagcgggatggtcaactcgtgtgtaac
cgacgcggagcgtatggcctggtcggggcgatggaattggtgcgcggcaccgtcagcgcg
catccggacggttttggttttttgattcccgaagcgggagggaaggatcttttcctttcc
ccccgggagatgcgcaaagtctttcacggcgacacgttgctggggcgggccatcggcgag
gatcggcgtgggcgtgtcgagggcacggtggtgcggattctggagcgggcgctccagcag
atcgtcggccgctattatgccgaaggtggggtccattacgtcattcccgaagaccgtcgt
attccccaggaatttggggtggtggagggcggcacgctggttccggtacacgggcaaatc
gtgatcctggaaatcacccaataccccgatgggcgtaatatgccgcaagggcgtgtgatc
gaaatcctcggagagcacatggcgccgggaatggaggtcgagattgccgtacgcaactac
ggtttgccgtatcagtggccggaagcggtggagcgcgagataaccgtattctcggagagc
gtaccggattccatgaaagcagggcgccgcgatctgcgcgatctgccgctggtcaccatt
gacggggccgacgccaaagactttgatgacgcggtctatgcggaagagatcgagaacggc
ttccgcctgatcgtggccatcgccgacgtcgctacctatgtgcgtccggattcggcgctg
gataaagaggccgttacgcgcggcaactccgtatatttcccccgtcgggtgatacccatg
ctgcccgagatattgtccaacgggctctgttctctcaacccccacgtcgaccgtctctgc
atgctctgtgaaatggagatggacgagacgggggaagtgcaacgtttccgttttgcgcgg
ggcatcatgcgttcgcaacgccgttttacctatgatgaggtggccgccatcttggccggt
gacgaggacgcacgcgctagagacgcggttctgattccgcatctggaagccttgcaccgt
ctctatgaaagcctctccaaggcgcgcgcccggcgtggcacgatcgagttcgactcgcag
gaaagccgcatcatctacaatgagcaggcacgtattgaaaaaatcgtggcggtcacgcgc
aatgtggcgcaccggatcattgaggaatgcatgctcgctgccaatgtctgcgctgcgcaa
tactttcgcatccacgatctgccgatgctgtatcgggttcatccggaaccctccagcgac
aagctggaagatttacgccgctttttgagtgagcttggggtgccggtacgtctgcccgtt
catccgcgcagcgctgatctggcaaaaatcattgaggatacccgcgagcggagtgattcc
agcctgatccagaccgtgatcttgcggagcctttcgcaggcctattacaccgcggatacc
ggtatgcacttcggtctggccttcccggcgtatacccactttacttcgccgattcgccgt
tatccggatctcgtggtgcatcgggggattcatgccctgctggacgccgcggataccgat
cccgtttggcttcctaaaaaagagctgcaagaactcagtcagcactgttccatgacggag
cgccgcgcggacgaggccagtcgtgaggcggtgaactggctcaagtgcgaatttatgatg
gataaggtgggggaaacctatgtcgggattattaccggggtcacagggttcggtcttttc
gtggcgttacgcgaaatctatgtggagggcctcattcatatcagtaccctgggtgaagac
tattttcactttgacgcgcaacactaccgaattgtcggggatcgcagcaaggaaaccttt
cagttgggggatgagatcgagatcaaggtcatgaatgtcaacctggatgagcggaagatc
gatttcgagcgtgtcccaaaagggggacaggtccgcggtgcggcgaaaagccgaaggagc
cgtcgcggtcgaaaagattga
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