Acidithiobacillus ferrianus: GL267_013710
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Entry
GL267_013710 CDS
T10957
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
afh Acidithiobacillus ferrianus
Brite
KEGG Orthology (KO) [BR:
afh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
afh03009
]
GL267_013710 (rlmD)
Enzymes [BR:
afh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GL267_013710 (rlmD)
Ribosome biogenesis [BR:
afh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GL267_013710 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
Methyltransf_11
UPF0020
Methyltr_RsmB-F
Cons_hypoth95
PrmA
RrnaAD
Methyltransf_12
Methyltransf_23
CMAS
PCMT
Motif
Other DBs
NCBI-ProteinID:
XRI68791
LinkDB
All DBs
Position
complement(2741298..2742620)
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AA seq
440 aa
AA seq
DB search
MPRLKPIHDAQPERVSIESLDTEGRGIARVEGKVLFVDGALPGERVRVRRTQGAKSYDCA
EIVRIDRASSLRVPPPCPHFGVCGGCSLQHLEPTAQVAIKQRQLEDSLWRIGKVRAERIL
PPIHGPSLGYRSKARLSVRTPRTRGVLVGFRERNSNFVVDMGKCLTLDPRVGEHLLPLRQ
LIAQLHAPQDVPQIEVAATPDAVALVFRHLRPLTDKDLQHLRDFGRTRAMQIWLQPRGPD
TLHSLWPESPEPLHYDLSDFQLRLRFDPLVFTQVNQAVNRMMVQRAMMLLRPQPGERILD
LFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLAECARFAVADLTQVRMEDF
APRGGIDKILIDPPRSGASEVLRSLVPGVRRLIYVSCNPATLARDAEYLVHERGYHLRAA
GVVNMFPHTAHVESIALFER
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccttaaacccattcacgatgcccagcccgagcgggtgtccatcgaaagtctg
gatacggaaggccgcggcatcgcgcgtgtcgagggcaaggtgctttttgtcgatggcgcc
ttgcccggggaacgggtccgggtccggcgtacccagggcgccaaaagctacgattgcgcc
gaaatcgtgcggatcgaccgggcctcatccctgcgggtgccgccgccctgcccccatttc
ggggtctgcggggggtgcagcttgcaacatctggagcccacggcgcaggtggctatcaag
caaagacaactggaagacagcctctggcgtatcggcaaggtgcgtgccgagcgtatcttg
ccgcccattcatggaccgtctttaggctatcgcagcaaggcgcgactgtcggtgcgcacc
ccgagaacccggggggtgctggtgggttttcgggagcgcaacagcaacttcgtggtggat
atggggaaatgcctgaccctcgacccacgtgtcggagagcatctcctgcccttgcgtcag
ctcatcgcgcaactgcacgcgccgcaggacgttccgcagatcgaagtggcggccacgccc
gatgcggtggccttggtgttccgtcatctgcgtccattgacggacaaggatctccagcac
ctacgcgacttcggccgcacccgtgcgatgcagatctggctgcaaccgcgcgggccggat
accctgcattccttatggccggagtcgccggagcccctccattacgatctgtccgacttc
caactgcgcctgcgtttcgatccgctggtctttacccaggtcaaccaggcggtcaatcgg
atgatggtacagcgcgccatgatgctgctgcggccgcagccgggagaacggattctcgac
ctgttttgcggcctcggaaatttcacgctgcctatcgcgcggctgggggcgcaggtgctc
ggtatcgagggggatgcccgactggtggccttggccgcggaaaatgcggccgccaacggg
ttggcggaatgcgcccgtttcgccgtggccgatctcacccaggtgcggatggaagatttc
gcgccaagggggggcatcgacaaaatactgatcgacccgccgcggagcggcgctagcgag
gttctgcgcagcctggtgcccggggttcgccgtctgatctacgtttcctgcaatccggcc
acgctggcgcgcgatgcggaatacctcgtgcatgaacggggctaccacctgcgcgccgca
ggcgttgtcaatatgttcccccataccgcccatgtcgaatccatcgctcttttcgagcgc
tga
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