KEGG   Acidithiobacillus ferrivorans: Acife_0728
Entry
Acife_0728        CDS       T01595                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
afi  Acidithiobacillus ferrivorans
Pathway
afi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:afi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Acife_0728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afi03400]
    Acife_0728
Enzymes [BR:afi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Acife_0728
DNA repair and recombination proteins [BR:afi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Acife_0728
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 SH3_13 UvrD_C_2 OB_YrrC HHH_5 Viral_helicase1 AAA_11 Helicase_RecD AAA_29 nSTAND3 HHH_2 RsgA_GTPase AAA_16 NTPase_1 AAA UvrD-helicase AAA_22 T2SSE ABC_tran PIF1 AAA_7 AAA_23 ATPase_2 cobW ABC_ATPase SLFN-g3_helicase PhoH AAA_28 NACHT ATP_bind_1 MeaB TsaE DEAD MobB UvrD_C NPHP3_N TrwB_AAD_bind IstB_IS21 RuvB_N MMR_HSR1 DUF4314 AAA_14 CbiA AAA_3 SMC_N
Other DBs
NCBI-ProteinID: AEM46926
UniProt: G0JLH4
LinkDB
Position
750491..752674
AA seq 727 aa
MAKPERQKQDTPNELLGGLIERVTFHNDGSGFCVLRIKARGHKELVTVVGHAAAVTAGEW
ITASGLWITDRDHGLQFKAAFLKISAPTSLDGIEKYLGSGMIRGIGPVYAKKLVKAFGDQ
VFTVIEETPERLAEVEGIGPIRRERMVSAWADQKVIREIMLFLHTHGVGTARAVRIFKTY
GTDAVRVMTENPYRLARDIHGIGFKTADAIAMKMGIEPHAPIRVRAGISYALMEARDEGH
CGLPHEELIPLAEKLLEVPTGAIESAIQEELREGAIIADQVQDADCVFLAPLYRNEQGIA
SLLKHLRTGKAPWAGIAADAAIDWVQKRLNIDLADSQQSAIRMVLQEKVALITGGPGVGK
TTLVNAILNILDAKKLRIALAAPTGRAAKRMSETTGKEAKTIHRLLEIDPQGGGFKRKED
YTLDIDLLVLDECSMIDVPLMHAVLKALPSQAGLLMVGDPDQLPSVGPGQVLADLIAAKT
IPEVHLTEIFRQAAQSRIIQAAYQINAGHTPDLRNPEGLSDFYYIAADDPAEAAEKLVKL
VTTHIPRRFGLDPLHDIQVLCPMNRSALGARALNEALQTALNGESTPTIEKFGRRFAPGD
KVMQIQNDYEKEVFNGDIGFVQGVDVEEGTLTVDFEGREVSYVFGELDLLQPAYAITVHK
SQGSEYPAVVIPMSTQHYPMLQRNLLYTAVTRGKRLVVLVGQKKAVAMAARNGSGKRRWS
KLREWMQ
NT seq 2184 nt   +upstreamnt  +downstreamnt
atggctaaaccggagcgccagaagcaggatacccccaatgaactgctcggtggactgatc
gaacgggtcaccttccataacgatggaagcggcttctgtgtgctccgcatcaaagcccgt
ggccacaaggaattggtcaccgtcgtggggcatgcggcagccgtcactgcgggtgagtgg
atcacggcttcgggcctctggatcaccgatcgcgatcatggcctgcagttcaaagccgct
tttctgaaaatctccgcgccgaccagcctggatggcatcgaaaagtatctgggctccggc
atgatccggggcattggtcccgtctatgccaaaaagctcgttaaagcttttggggatcag
gtattcaccgtcatcgaagaaacaccggaacgcctggcggaagtggaaggtattggccct
attcgccgggaacgcatggtcagcgcctgggcggaccagaaagtgattcgtgagatcatg
ctgtttctgcacacccatggtgtgggtaccgcccgggcggtgcgcatcttcaaaacctac
ggcaccgatgccgttcgggtcatgacggaaaacccctatcggctggccagggatattcat
ggcatcggcttcaaaaccgctgacgccatcgccatgaaaatgggtattgaaccccatgct
cccattcgggttcgggcaggcatttcctatgccctcatggaggcacgcgacgaggggcac
tgcggattaccgcatgaggaactgatccctctggccgaaaagttgctggaagtcccgaca
ggcgccatcgaaagcgccattcaggaagaattacgggaaggggcgatcatcgcagatcag
gtgcaggacgccgattgtgtcttcctggcccccctttaccgcaatgaacagggcatcgcc
agcctcctgaagcatctacgtactggcaaagccccatgggcgggcattgcggccgatgcg
gctattgattgggtgcagaagcggctgaatattgatcttgccgacagtcagcaatcagcc
atccgtatggtgttgcaggaaaaagtggcactgattaccggcggccccggtgtgggaaag
accacgctcgtgaacgcaatcctgaatatcctcgacgccaagaaactgcgcatcgcactg
gccgcccccaccggacgtgcggccaaacgcatgagtgaaaccaccggcaaagaggccaag
accatccaccggctcctcgaaatagatccccagggcggtgggttcaaacgcaaagaggat
tataccctcgatatcgatctgctggtcctggatgaatgctccatgatcgacgtgcccctg
atgcacgccgtcctcaaagccctgccatcccaggcgggactgctgatggtgggtgatccc
gatcagttgccctccgtaggcccagggcaggtgctggctgatctcattgccgccaaaacc
atccccgaagttcatctgacggaaatctttcgccaggcggcgcaaagccggatcattcag
gcggcctatcagatcaatgcagggcacacgccggacctgcgaaacccggaggggctcagc
gatttttattacatcgcagcggatgatccagcggaagcggcagaaaagctcgtcaaactg
gtcaccacccatatcccacgtcgcttcggcctggacccgctgcatgatatccaggtgctt
tgccccatgaaccgcagtgcgctgggtgcccgcgcgctcaatgaagcgctccaaacggcc
ctcaatggtgaaagcacaccaaccatcgaaaagttcggccgccgtttcgcacccggtgac
aaggtcatgcagatccagaacgattatgaaaaagaggttttcaatggcgacatcggattt
gtgcaaggtgtggacgtggaagaaggcaccctgaccgtagactttgagggcagagaggtc
agctatgtttttggggaactggatctcctgcaaccggcctatgccatcaccgtgcacaag
agtcagggttcggagtatcctgccgtggtcattcccatgagcacgcaacactaccccatg
ctgcaacgcaatctgctctatactgctgttacccggggcaagcgtctggtcgtgcttgtg
ggtcagaaaaaggctgtggccatggcggcgcggaatggatccgggaaacggcgatggtca
aaactgcgggagtggatgcagtag

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