Acidithiobacillus ferrivorans: Acife_0853
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Entry
Acife_0853 CDS
T01595
Name
(GenBank) DNA-binding DNA glycosylase/AP lyase, H2TH
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Acife_0853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_0853
Enzymes [BR:
afi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Acife_0853
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Acife_0853
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Acife_0853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_TFIIB
DUF7129
NFACT_N
HscB_4_cys
Auto_anti-p27
DNA_ligase_ZBD
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AEM47036
UniProt:
G0JMK7
LinkDB
All DBs
Position
871237..872040
Genome browser
AA seq
267 aa
AA seq
DB search
MAELPEIELLRQKLRRSILHKRVGVMQMQNAKGEPLTDGAGMDDAALQGKAITDLHRYGQ
YLFLELDRKDILAMQLGGELSGELERGPAQAEGGEEPRAALEIQINGQQRLRFQGTQLGN
RLRLLDENSDVDFLTKLGPDPLMVHGEGLGVLREALSRRRSALRNILLDDTFAPGIGGIW
ADEILFQARLRPDRTATSLSEEDRERFLEQIPKVLDRAVRCQAKTNLLPKTFLTRHRADG
HCPSCGGALETLAVGGKSALFCPACQS
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggccgagttgccagaaatagaactgctcagacaaaagctgcggcgcagtatcctgcac
aagcgggtcggcgtcatgcagatgcagaatgccaaaggcgagccactgaccgatggcgcc
gggatggatgatgccgccctccagggcaaagccatcactgacctgcatcgctatggtcaa
taccttttcctggaactggatcgcaaagacatcctcgccatgcagttgggcggtgagctg
agcggcgaacttgaacgcggccctgctcaggcggaaggcggggaagagccgcgtgcggca
ttggagattcagatcaatggccagcagcgcttgcgttttcaggggacccagttgggtaac
cgcctgcgcctgctggatgaaaacagcgatgtggatttcctgaccaagctcggcccggat
ccgctgatggtgcatggagaagggctcggagtattgcgcgaagccctgagtcgtcgccgc
agtgccctgcgtaacatcctgctggatgatactttcgcgccgggcatcggcggtatctgg
gcggatgaaatcctttttcaggcccgtttgcggccggatcgcaccgcgaccagcctcagc
gaagaagatcgcgagcgtttcctggagcagatccccaaggtgctggatcgtgccgtgcgc
tgtcaggcgaagaccaacctgctgcccaagaccttcctcacccgccatcgggcagatggg
cactgtccgagttgtggcggcgcactggagacccttgcggtggggggtaagagcgcgctg
ttctgcccggcctgccagtcttaa
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