Acidithiobacillus ferrivorans: Acife_0873
Help
Entry
Acife_0873 CDS
T01595
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03410
Base excision repair
afi03430
Mismatch repair
afi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Acife_0873
03430 Mismatch repair
Acife_0873
03440 Homologous recombination
Acife_0873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_0873
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Acife_0873
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Acife_0873
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Acife_0873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Plasmid_stab_B
Motif
Other DBs
NCBI-ProteinID:
AEM47055
UniProt:
G0JMM6
LinkDB
All DBs
Position
891474..893291
Genome browser
AA seq
605 aa
AA seq
DB search
MPEPIRIIDRPLSQDVLRAAVAAGYTRLQSRIIAGRLGDEDAGKVGLLVRPPLSALDSPD
RLPDIGVAAEAVARAVKQGWPVILLSDFDCDGASGHSVLKFALRDYFGVPEHQIHSYIGH
RLREGYGVSESVTQRILDSAPRPALVITADQGSSDHARIEKLRDHGLTTVVTDHHGVPEQ
GPPHAAIACVNPVRMDSTFADPYIAGVHVAWLLCCAVRQRLIDWGHLPANAPRLGGLLDL
VALGTIADCVDLARSPNNRAVLIRGLALMNAPEARPAWRALHTVSRCSGPITAATLSFTF
GPIINARGRLDCALGAVDLLMCDDEEEALRLAQILVEHNSERKQVQSQMLRRILPLAEQQ
AVGGCMAITVFDPEGHPGVHGVCAARLVETYGRPAAYFSPKQGSDDITASLRTVPGFHIR
NALAVIAESHPGDFVTWGGHAGAGGVTLKREGFDRFATAFNAAATRALAAWTPGPRILTD
GELEQRPSLELFKELAALEPFGRQWESPVFRTEGRILSVRPVGDGTHLKLLMGIGPDRFD
AIWFGAVRDGVCPVEMGQVVRVTFELDANTFRDETCLQLRVRHAVAIARSPLMAQRSATS
DLLAQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacccatacgaatcatcgacaggccattgtcgcaagatgtcttgcgtgcggcc
gtggctgctggttatacgcgtctacagtcgcgaatcatcgcgggtcgactgggtgacgag
gatgcgggaaaggtgggattgcttgttcgcccgccgttgagtgcgctcgattcgccagac
cgtttacccgacatcggcgtcgcagctgaggccgttgcacgcgcggtgaagcaagggtgg
cctgtaattctgctgtcagacttcgactgtgacggtgcttccgggcactcggtgctgaag
tttgcgttgcgtgactacttcggtgtgcctgaacaccaaatacacagctacatcggtcat
cgactgcgggaagggtacggtgtttcggaaagcgtaacccagcggatcctggactcggcg
cctcgccctgcactcgtgattactgctgatcaggggagttcggaccatgcccgtatcgag
aagctgcgcgatcatggtttgacgacggtggtgacggaccaccatggggtcccagagcaa
ggcccgccgcacgcagctatcgcctgtgtcaatcccgtccgcatggattcgacattcgcc
gacccctacatcgcgggcgtgcatgtggcctggctgctctgctgcgccgtacggcaacgg
ctcatcgactggggacaccttccggccaatgcaccgcgtctcggtggtctcctcgacttg
gtcgccctggggaccatagcggattgtgtcgatctggcccgttcgccgaataatcgcgcg
gtgctgatacgtggcctcgcactgatgaatgcgccggaggcgcgacctgcgtggcgtgcc
ttgcacacggtctctcgttgctccggccccattacggcggcgacattgagttttaccttc
gggccgatcatcaatgcccggggccggcttgattgcgcacttggggccgtcgacctgttg
atgtgcgacgacgaggaggaagcgttacgtctggcgcagatactggtggaacacaacagc
gagcgcaagcaggtccaatcccagatgctgcgccgtattcttccattggcggaacagcag
gcggtgggcgggtgtatggcaattaccgtgttcgatccggaagggcatccgggcgtacat
ggcgtgtgcgctgcccggttggtggaaacctatggacgtcctgctgcttatttctctccc
aagcaggggagcgacgatatcaccgcctcgctgcgcaccgtgcccggatttcatatacga
aacgcccttgcagtgatcgcagaatcacatcctggcgacttcgtcacatggggcggtcat
gcgggtgctggcggggtcacgttgaaacgtgagggatttgatcgttttgcgactgccttc
aatgcggccgcaacccgcgccttggcagcgtggaccccaggaccccggatactgaccgat
ggtgagctcgaacagcgcccaagcttggaattgttcaaagaactcgctgccttagagcct
ttcggtcggcaatgggagtcgccagtcttccgtacagaaggcaggatcctcagcgtgcgt
cccgtcggggacggaacccacctgaaattgttgatgggcatcgggccagatcgattcgat
gccatctggtttggcgcggtccgcgacggtgtgtgtccggtggaaatggggcaggttgtc
cgagtaactttcgagctggatgccaataccttcagagacgagacgtgcttgcaattgcgc
gtccggcatgcggttgctatcgcaaggagcccgttgatggcccagcgatcagccacctct
gatctgcttgcgcagtaa
DBGET
integrated database retrieval system
