Acidithiobacillus ferrivorans: Acife_1092
Help
Entry
Acife_1092 CDS
T01595
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acife_1092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afi03019
]
Acife_1092
03009 Ribosome biogenesis [BR:
afi03009
]
Acife_1092
Enzymes [BR:
afi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Acife_1092
Messenger RNA biogenesis [BR:
afi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acife_1092
Ribosome biogenesis [BR:
afi03009
]
Prokaryotic type
rRNA processing factors
Acife_1092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEM47258
UniProt:
G0JNV5
LinkDB
All DBs
Position
complement(1116067..1118376)
Genome browser
AA seq
769 aa
AA seq
DB search
MKRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFLQQEQGRKRIQDLVREGQEVIVQVDKEERSSKGAALTTFVSL
AGRYLVLMPNNPRAGGVSRRIEGDDRTQIRQHLQLLDIPENMGVIARTAGIGQELEALQR
DLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDFGEVLIDEEGAYHAAVQ
FMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAVD
VNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVENKL
KDALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATSMHV
LRLLYEECMKTGAAEIECRVPVDVAVYLLNEKRRPILELEAKTDTRILIIPSPDMVTPHY
QIQRTRVEGDSSRPAPVVGSDNSTLPARPSRPTNESAALSPLTAPPPPDVLPPLRTPTAP
SSPKAKASAKVAVPPEEGILARLVRALVSRYVPVDAATFLAETSGAELPASTEQASEMGA
DTQESNSEDRNSRRRRRGGRRARARRSTQGGENGAEPSSSADAENAEGTYTTEGFQDKDL
LAGPADDTHVPEELVYPGTVPAAADWHQMLVPATAPIPVAAATIERNSAEEERPHAAGQP
TAAEPMPEPIQESVNAAIPESILPAVQPEPVSVAVPSEGEQQSFSLDED
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttgattaacgctacccacgcagaggagttgcgggtggctttggtagat
ggtcaaaaactcctcgatctggacattgaacgcgcctaccgggagcagaaaaaaagcaat
atatacaaaggccgcatcacccgtgtcgagcccagcctcgaagctgccttcgtcgattac
ggtgccgaacggcacggctttctgcccctcaaggaaatcgcccgggaatacttcctgcag
caggaacagggccgcaaacgcattcaggatctggtgcgggaaggtcaggaagtcatcgtt
caggtagacaaggaagagcgctccagcaaaggcgcggcactcaccaccttcgtcagcctg
gccggacgctatctggtgttgatgccgaacaacccgcgtgccggtggtgtctcccggcgc
attgagggtgatgaccgcacccagatccgccagcacctgcaactcctggacatccccgaa
aacatgggcgtcatcgcccgcaccgcggggatcggtcaggaactggaggccttgcagcgc
gatctggagtatctcaaacagatctggcaggccatcgtcgatacagcagcaccgcgtgcc
gcccccttcctgatttatcaggagggtaacgtcgtggtacgcgctctgcgcgatcacttc
tccgaagatttcggggaggtactgatcgacgaggagggggcctaccacgctgcggtacaa
ttcatgggctccatgatgccgaaaatggtgcatcgtctgaagtattatgacaatgacgtg
cccctcttctcccgctatcagatcgagcagcagattgaatcggccttcagtcgcgaagtg
cgcctggagtcagggggcgccatcgtcatcgaccataccgaggcgctggtggccgtagat
gtaaactcgggccgcgcgaccaagggccaggatattgcggagaccgctttccagaccaat
ctggaagccgctgaggagatcgcccggcagattcgcctgcgcgatctgggcgggctcatc
gtggtcgacttcatcgatatggaatcccccaagcaccagcgcgaagtggagaacaagctc
aaggacgccctcaagctggatcgggcccgggtgcagttggggcgcatctcccgctttggt
ctcatggaaatgtcccgacaacgtctcggcgccagcctggaagaagcttcttctgaaccc
tgcccgcgctgtaacggtaccggtcagatacggggctgcgaagccaccagtatgcacgtc
ctgcgcctgctgtatgaggagtgcatgaaaaccggtgccgcagagatagagtgtcgggtg
ccggtggatgtggccgtgtatctgctcaacgaaaaacgccgcccgattctggaactggaa
gcaaagaccgatacccgcatcctgatcattccctcgccggacatggtcacgccccattat
cagattcagcggacgcgggtggaaggcgacagcagccgaccggcaccagtcgtcggcagc
gacaacagcactctgcctgcacgccccagccgtccgacgaacgaatcagcggcactgagc
ccgttgacggcgccgccgccgccggatgtattaccccctttacgcaccccaacagcaccc
agcagcccgaaggcgaaagcgtccgccaaggtggccgttccgccggaagagggtattctg
gcccggctggtgcgggcactggtatcccgctatgtgccggttgacgcagcaactttcctg
gcagagaccagtggcgctgaactgccggcgagcacggagcaggccagcgagatgggcgcc
gacacccaggaaagcaacagcgaagaccgcaacagccggcggcggcgccgtggtggacgc
cgtgcgcgtgcccggcgctccactcagggcggggaaaatggcgcagaaccatcttcttct
gcggacgcggaaaatgctgagggtacctacacgacagagggcttccaggataaggatctg
ctggcgggccccgcggatgacacccatgttccggaagaactcgtctatcccggcacggta
cctgccgccgccgactggcaccagatgctggtccctgctacggcgccgattcccgtcgcc
gctgcgaccatcgaaaggaattcggcagaagaagaacgccctcacgccgccgggcagccg
acggcagcggagcccatgcctgaacccattcaggaatctgtcaacgcggcaattccggaa
tccatactgcccgcggtgcaaccggaacccgtatcggttgccgttcccagcgaaggtgag
cagcagtctttctcactggacgaagactga
DBGET
integrated database retrieval system
