Acidithiobacillus ferrivorans: Acife_1224
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Entry
Acife_1224 CDS
T01595
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acife_1224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afi03019
]
Acife_1224
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_1224
Enzymes [BR:
afi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acife_1224
Messenger RNA biogenesis [BR:
afi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acife_1224
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Acife_1224
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEM47380
LinkDB
All DBs
Position
complement(1221687..1223483)
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AA seq
598 aa
AA seq
DB search
MVSTLEILRHTFGYDAFRAPQEEVIQTLIAAKDALVLMPTGGGKSLCYQIPAIALAGVGV
VVSPLIALMEDQVNALRQAGVAAAALNSSASPAEARATEEALLQGTIDLLYIAPERLLQE
RTLALLQRSTVNLFAIDEAHCVSQWGHDFRPEYLQLRVLHERFPQVPRIALTATADSKTR
QEIIERLALQKAAVFIRSFDRPNIRYHIHSGSQGARNALLRFIRDRHAGEAGIVYCLSRK
RVAEVAEWLQGEGLGALPYHAGLSADERRRNQQRFQRDEGVIMVATIAFGMGIDKPNVRF
VAHLNLPKSIEAYYQETGRAGRDGLPAEAWMHYGLQDVVQLRQMIQQSEADLPRKQMEGH
KLDAMLALCETTDCRRQTLLGYFSEHLALPCGNCDNCLQPPATWDATVAAQKALSAIHRT
GQRFGVQYLVDVLLAREDPRIQQWGHHQLTVYGIGKELSANAWRALFRHLLLRGLVEVDA
EGHGGLRLSPSSRPLLRGEEKLTLRQHESTTPKQRDKRPEVALQDADLWEALRQHRRELA
LAQGVPPYVIFHDATLMEMLQRRPRDLEGLATVPGIGARKLAAYGESFLKILHRAPRP
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
ttggtatccaccctggaaatactccgccacaccttcggctatgatgccttccgggcgcca
caggaagaggtgatccagaccctgatcgcggccaaagatgcgctagtgctcatgcccacc
gggggcggcaaatccttgtgctatcagattcccgccatcgccctggcaggcgtcggcgtg
gtggtttctccgttgatagcgctcatggaagatcaggtcaatgccctgcgtcaggcaggc
gtagcggctgccgccctgaactccagcgccagccccgcagaagcgcgtgccaccgaagag
gccctgctgcaaggcaccattgatctgctctatatcgccccggaacgcttactacaggag
cgcactctcgccctgctgcaaagaagcaccgtcaatcttttcgccatcgatgaagcccac
tgcgtctcccagtggggccacgactttcgcccggaatacctgcagctccgggtgctgcat
gagcgctttccccaggtaccgcggatcgcccttaccgctaccgccgactcgaaaacccgc
caggaaatcatcgagcgactagcgttgcagaaggctgccgtctttatccgctccttcgat
cgccccaatatccgttaccacatccacagcggtagtcagggcgcgcgcaacgccttgctg
cgcttcatccgcgaccgccatgcgggcgaggcgggcatcgtttactgcttgtcccgcaag
cgcgtcgcagaagtggccgaatggctgcaaggcgagggactcggcgccctgccttaccac
gccggcctgagcgccgacgagcggcgccgcaaccagcaacgttttcagcgggatgaaggg
gtaattatggtcgccaccatcgccttcgggatgggtatcgataagcccaacgtccgcttc
gtcgcccatctgaatctgcccaagagcattgaggcgtattatcaggaaaccggccgcgcc
ggacgcgacggactgcccgccgaggcctggatgcactatggcctgcaggatgtggtgcag
ttacggcaaatgattcagcaatcggaagccgacctgccacgcaaacagatggaagggcac
aaactggacgccatgctcgccctttgcgaaaccaccgactgccgacggcagaccctgctc
ggctactttagcgagcacctcgccctgccctgtggcaattgcgataattgtctgcaaccc
cctgccacctgggacgccaccgtcgctgcccagaaagccctttctgccatccatcggacc
ggtcagcgcttcggggtgcaatatctggtcgatgtgcttctcgcccgcgaagacccgcgc
atccagcaatggggccatcaccagttgaccgtctacggcattggcaaagaactctccgcc
aacgcctggcgcgccctttttcgccatctcttactgcgtggactggtggaagtcgatgcc
gagggtcacggtggcctgcgcctcagcccgagcagtcgtccgctcctgcgcggcgaggaa
aaactgacgctgcgccagcatgaaagcacgacacccaaacagcgcgacaaacgcccggaa
gtcgcactccaggatgccgatctttgggaagccctgcgccagcatcgccgcgaactggcc
ctggcgcagggcgtgcctccttacgtcattttccacgacgccaccctcatggaaatgctg
caacgacgcccccgcgacctggaggggctggctaccgtccccggcatcggcgcgcgcaaa
ttggcggcttacggggagtccttcctgaagatactgcatcgtgctccgcgtccataa
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