Acidithiobacillus ferrivorans: Acife_1285
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Entry
Acife_1285 CDS
T01595
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acife_1285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afi03019
]
Acife_1285
Enzymes [BR:
afi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acife_1285
Messenger RNA biogenesis [BR:
afi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acife_1285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
P-loop_SecA
UTP25_NTPase-like
Utp25_C
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEM47440
UniProt:
G0JPW5
LinkDB
All DBs
Position
1285937..1287196
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AA seq
419 aa
AA seq
DB search
MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI
LHKLSATADTAARGPSSVRALILVPTRELAAQVEESVQLYGRYLSLRSLVLIGGVKINPQ
MQKLRRSVDVLVATPGRLLDHIQQRSVDLSRVEILVLDEADRMLDMGFIRDIRRILAVLP
KKRQNLLFSATFSPEIRALADGLLNNPASVEVASRNATADNVAQRVFAVDQDRKRELLAH
LIEEHQWGQVLVFTRTKHGADRLAKHLSQDGVQAMAIHGDKSQGARTRALAEFKEGKVRV
LVATDIAARGIDISDLPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ
DVEKLLRRSFDREVVVGFEPRQPFASHAPSSAPRRPAQAAGRGRPGSGAAPSGRARRTY
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttttgaatcccttgggctttctgagcccatttggcgtgcagctgccgagcgc
ggttacacctccccaacccccattcaggaacaggccatcccggtggttatgtctggtgtc
gatctgttggccggcgcgcagacgggtaccggcaagacggctgcgtttgccatgcccatt
ctgcacaaactgtccgccaccgcagataccgcagcgcgtggtccttccagtgtgcgtgcg
ctgattctggtccccacccgcgaactggcggcgcaggtagaggagagcgtgcagttgtac
gggcgctatctttccctgcgctcgctggtgctcatcggtggtgtcaagatcaatccgcag
atgcagaagttgcgtcgtagtgtagacgtattggtcgctacccccggtcgcctgctggat
cacatccagcagcgcagcgttgacctctctcgtgtcgaaatcctggtgcttgacgaagcc
gatcgcatgctcgacatgggctttatccgcgacattcggcgtattcttgcggtgttgccg
aaaaaacgccagaacctgctcttttcggcgactttttcgccagaaatccgtgctctggcc
gatggcctgctgaataacccggccagcgtcgaggtcgcatcgcgcaatgccaccgctgac
aatgtcgcgcagcgggtttttgccgtcgatcaagatcgcaagcgcgaactcctcgcgcat
ctgattgaagaacatcaatgggggcaggtactggtttttacccgcaccaagcatggtgcc
gatcgactcgccaagcacttatcccaggacggtgtgcaggctatggctatccatggcgac
aagagccagggtgcccgcacccgcgctctggcggagttcaaggaaggtaaagtacgggta
ttggtcgcgacggatatcgctgcccgcggcatcgatatcagtgatttgccccacgtggtg
aattttgaactcccccatgtgcccgaggattatgtccatcgcatcggacggactggtcgc
gctggcaacaatggccaggcggtatcgctggtgagcagtgaggagcgtaagcagttgcag
gatgtggaaaagctgctgcgccgctcctttgaccgggaggtcgtcgtcggcttcgagccg
cgccaacccttcgccagtcatgcgccgtcatcggctccgcgccgtccggcgcaagccgca
gggcggggccgacccggttcaggggcggcgccttcgggccgtgcccgccgcacctactaa
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